Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq5650 145 9e-30 >seq5650 Length=20435342 Score = 145 bits (160), Expect = 9e-30 Identities = 234/332 (70%), Gaps = 6/332 (2%) Strand=Plus/Plus Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714 |||||||| | ||| ||||||||||||||| || | || || ||| ||| | Sbjct 5343032 TTGGTCTTGATGGGGAAGTCGGTGCCGCAGGTGTTGAGGACGTAGCGCCAGGGCACGGGG 5343091 Query 162715 AGTCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTA 162773 |||| | ||| ||||| | ||||| || |||||||| | || ||| || ||||| Sbjct 5343092 C-TCCGCAGCAGGTCCTGCATGCAGTTGAGGTCGGCCTGCAGCCGGGACCAGGAGGCGTA 5343150 Query 162774 CACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCAT 162833 ||| |||||||||| | |||| || ||||| ||| ||| || | | || || Sbjct 5343151 CACCACGCTCTCCAGACGGCTGGCCACGAAGACGTTGGGGAAGCAGGCGGCGATGGCCCG 5343210 Query 162834 CACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891 ||||||| | ||| | |||| || || || || ||||| |||||||| | ||| Sbjct 5343211 CACGGCCTGCTGGAAGGCGGCGGGG--GCCTTGCTGTCCACGTGCACGCAGTAGACGTTC 5343268 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 || |||||||||| || | ||| | | |||||||||||| ||||| ||||| | || Sbjct 5343269 TGCGGGGCGTAGAGGGAGCGCAGGAGCCGCTCGAACATCTCGATCTTGTGGTGGATGACC 5343328 Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 || || || || |||||||| || |||||||| Sbjct 5343329 ATGGAGTAGGCGATGGGGAAGTCGGCCTCCTC 5343360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578262266360000