Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq5650 145 9e-30
>seq5650
Length=20435342
Score = 145 bits (160), Expect = 9e-30
Identities = 234/332 (70%), Gaps = 6/332 (2%)
Strand=Plus/Plus
Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714
|||||||| | ||| ||||||||||||||| || | || || ||| ||| |
Sbjct 5343032 TTGGTCTTGATGGGGAAGTCGGTGCCGCAGGTGTTGAGGACGTAGCGCCAGGGCACGGGG 5343091
Query 162715 AGTCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTA 162773
|||| | ||| ||||| | ||||| || |||||||| | || ||| || |||||
Sbjct 5343092 C-TCCGCAGCAGGTCCTGCATGCAGTTGAGGTCGGCCTGCAGCCGGGACCAGGAGGCGTA 5343150
Query 162774 CACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCAT 162833
||| |||||||||| | |||| || ||||| ||| ||| || | | || ||
Sbjct 5343151 CACCACGCTCTCCAGACGGCTGGCCACGAAGACGTTGGGGAAGCAGGCGGCGATGGCCCG 5343210
Query 162834 CACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891
||||||| | ||| | |||| || || || || ||||| |||||||| | |||
Sbjct 5343211 CACGGCCTGCTGGAAGGCGGCGGGG--GCCTTGCTGTCCACGTGCACGCAGTAGACGTTC 5343268
Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951
|| |||||||||| || | ||| | | |||||||||||| ||||| ||||| | ||
Sbjct 5343269 TGCGGGGCGTAGAGGGAGCGCAGGAGCCGCTCGAACATCTCGATCTTGTGGTGGATGACC 5343328
Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983
|| || || || |||||||| || ||||||||
Sbjct 5343329 ATGGAGTAGGCGATGGGGAAGTCGGCCTCCTC 5343360
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578262266360000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |