Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq6642 100 3e-16
seq1 100 3e-16
>seq6642
Length=9979828
Score = 100 bits (110), Expect = 3e-16
Identities = 156/223 (70%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964
|| ||||| |||| ||| | | | ||||| || || ||||||||||| || ||| ||
Sbjct 6586395 CAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCG 6586336
Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024
| |||||| ||||| ||||| | | |||| | | ||| ||||| ||||| ||||||||
Sbjct 6586335 CCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATGCCTTC 6586276
Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084
|||||| || || |||| | || | || || | || || || |||| ||
Sbjct 6586275 TTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCAACCTCGAGGGT 6586216
Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127
| || || |||||||| || || | || ||||||||| ||
Sbjct 6586215 GATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGCCT 6586173
Score = 100 bits (110), Expect = 3e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
|||| |||| ||| | | | |||||||| || ||||||||||| || ||| |||
Sbjct 6586619 CGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCG 6586560
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
||||| ||||| || || | | |||| | | ||| ||||| ||||| |||||||||||
Sbjct 6586559 TCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCTTTG 6586500
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| || || |||| | ||| | || || | ||||| || |||| || |
Sbjct 6586499 TCTTGGATCTTGGCCTTCACATTTTCAATTGTGTCACTGGGCTCAACCTCGAGGGTGATG 6586440
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| || ||||||| ||||| | ||| ||||||||
Sbjct 6586439 GTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 6586405
Score = 95.1 bits (104), Expect = 1e-14
Identities = 153/220 (70%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967
||||| |||| ||| | | | ||||| || || ||||||||||| || ||| |||
Sbjct 6586848 GCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCC 6586789
Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027
||||| ||||| || || | | | || || | ||| ||||| ||||| |||||||||||
Sbjct 6586788 GTCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGAGGAATGCCTTCTTT 6586729
Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087
|| || || |||| | || | || || | ||||| || |||| || |
Sbjct 6586728 GTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGAT 6586669
Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127
|| || |||||||| || || | ||| ||||||||| ||
Sbjct 6586668 GGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGCCT 6586629
Score = 86.0 bits (94), Expect = 6e-12
Identities = 151/220 (69%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964
|| ||||| |||| ||| | | | ||||| || || ||||||||||| || ||| ||
Sbjct 6586167 CAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCG 6586108
Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024
| ||||| ||||| || || | | |||| | | ||| ||||| ||||| ||||||||
Sbjct 6586107 CCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTC 6586048
Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084
|| || || || |||| | || | || || | ||||| || |||| ||
Sbjct 6586047 CTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGT 6585988
Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
| || || |||||||| || || | || |||||||||
Sbjct 6585987 GATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 6585948
>seq1
Length=196202544
Score = 100 bits (110), Expect = 3e-16
Identities = 88/110 (80%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564
|||| ||| ||||| | |||||| ||||||||||| ||| ||||| || |||||||||
Sbjct 194683622 TACTCCACTATTTCTGTGCACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTG 194683681
Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614
|| |||| ||||| | ||||||| | |||||||| ||| ||| |||||
Sbjct 194683682 CTCTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGTGTGCCAGTCTC 194683731
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476471344401000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |