Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_026141.2
Length=4988
Score E
Sequences producing significant alignments: (Bits) Value
seq1781 123 8e-25
seq7311 98.7 3e-17
seq6387 98.7 3e-17
seq1 98.7 3e-17
>seq1781
Length=149560735
Score = 123 bits (136), Expect = 8e-25
Identities = 71/73 (97%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 144205279 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 144205338
Query 2828 CCCGGGCTTCAGC 2840
|||||||||||||
Sbjct 144205339 CCCGGGCTTCAGC 144205351
Score = 122 bits (134), Expect = 3e-24
Identities = 72/75 (96%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825
|| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 144225932 ATCGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCA 144225991
Query 2826 ACCCCGGGCTTCAGC 2840
|||||||||||||||
Sbjct 144225992 ACCCCGGGCTTCAGC 144226006
Score = 118 bits (130), Expect = 3e-23
Identities = 70/73 (96%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 148146284 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 148146343
Query 2828 CCCGGGCTTCAGC 2840
|||||||||||||
Sbjct 148146344 CCCGGGCTTCAGC 148146356
Score = 118 bits (130), Expect = 3e-23
Identities = 70/73 (96%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 148158731 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 148158672
Query 2828 CCCGGGCTTCAGC 2840
|||||||||||||
Sbjct 148158671 CCCGGGCTTCAGC 148158659
Score = 116 bits (128), Expect = 1e-22
Identities = 69/72 (96%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 148288514 GCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 148288573
Query 2829 CCGGGCTTCAGC 2840
||||||||||||
Sbjct 148288574 CCGGGCTTCAGC 148288585
>seq7311
Length=4974273
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 3191856 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 3191797
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 3191796 CCGGGTTTCGGC 3191785
>seq6387
Length=12762846
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 4536850 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 4536909
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 4536910 CCGGGTTTCGGC 4536921
>seq1
Length=196202544
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||| ||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 145914529 GCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 145914470
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 145914469 CCGGGTTTCGGC 145914458
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 146476739 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 146476798
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 146476799 CCGGGTTTCGGC 146476810
Score = 86.0 bits (94), Expect = 2e-13
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|||||| |||||||| ||||||||| ||||||||||||||||||||| ||||||||| |
Sbjct 155567044 GCTGAAATAGCTCAGGTGGGAGAGCGTTAGACTGAAGATCTAAAGGTTCCTGGTTCAGTC 155566985
Query 2829 CCGGG 2833
| |||
Sbjct 155566984 CTGGG 155566980
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15845530491375
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |