Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq6387 134 1e-26
seq6642 132 4e-26
>seq6387
Length=12762846
Score = 134 bits (148), Expect = 1e-26
Identities = 145/192 (76%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| || | || ||| || | || ||||||||||| || |||||
Sbjct 4540603 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAA 4540544
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| || ||| || || | |||| || |||||||||| |||||| ||||| |
Sbjct 4540543 GATCAGCCTCTGTTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 4540484
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | |||||||| | ||||||||||| ||||| || || || ||||| || |||||
Sbjct 4540483 CTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCAC 4540424
Query 35725 AAATATCTGCAT 35736
||| ||||||||
Sbjct 4540423 AAAGATCTGCAT 4540412
Score = 132 bits (146), Expect = 4e-26
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583
|| ||||| ||| | || |||||| || |||||||| |||| || || ||| | ||
Sbjct 4540396 CAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCATC 4540337
Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643
||||||||||| || ||||| |||| || |||||| || | |||| || |||||||||
Sbjct 4540336 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTC 4540277
Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703
| |||||| ||||| | | | ||||| || | || ||||||| ||||| ||
Sbjct 4540276 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGT 4540217
Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| || ||||| || |||||||| ||||||||
Sbjct 4540216 CTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 4540184
Score = 125 bits (138), Expect = 6e-24
Identities = 143/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| |||| || ||| ||| |||| ||||||||||| || || ||
Sbjct 4540147 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAA 4540088
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| || |||||| || | |||| || |||||||||| |||||| ||| | | |
Sbjct 4540087 GATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 4540028
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | || || || | ||||||||||| ||||| || || || || | || |||||
Sbjct 4540027 CTCGATGGTATCACTGGGTTCCACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTCAC 4539968
Query 35725 AAATATCTGCAT 35736
|| ||||||||
Sbjct 4539967 GAAGATCTGCAT 4539956
>seq6642
Length=9979828
Score = 132 bits (146), Expect = 4e-26
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583
|| ||||| ||| | || |||||| || |||||||| || | || ||| ||| ||||
Sbjct 6586161 CAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTC 6586102
Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643
||||||||||| || ||||| ||||||| |||||| || | ||||| || ||||||||
Sbjct 6586101 TTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCCTTGTC 6586042
Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703
|||||| ||||| | | | | ||||| || | || ||||| | ||||| ||
Sbjct 6586041 TTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 6585982
Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| || |||| || |||||||| ||||||||
Sbjct 6585981 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 6585949
Score = 132 bits (146), Expect = 4e-26
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583
|| ||||| ||| | || |||||| || |||||||| || | || ||| ||| | ||
Sbjct 6586389 CAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 6586330
Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643
|||||||||||||| ||||| ||||||| |||||| || | ||||| || || || ||
Sbjct 6586329 TTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATGCCTTCTTTATC 6586270
Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703
| |||||| ||||| | | | | ||||| || | ||| ||||| | ||||| ||
Sbjct 6586269 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCAACCTCGAGGGTGATGGT 6586210
Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| || |||| || |||||||| ||||||||
Sbjct 6586209 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 6586177
Score = 132 bits (146), Expect = 4e-26
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583
|| ||||| ||| | || ||| || || |||||||| || | || ||| ||| ||||
Sbjct 6586617 CAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTC 6586558
Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643
||||||||||| || ||||| ||||||| |||||| || | ||||| || || |||||
Sbjct 6586557 TTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCTTTGTC 6586498
Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703
|||||| ||||| | || | | ||||| || | || ||||| | ||||| ||
Sbjct 6586497 TTGGATCTTGGCCTTCACATTTTCAATTGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 6586438
Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| || ||||| |||||||| || ||||||||
Sbjct 6586437 CTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 6586405
Score = 123 bits (136), Expect = 2e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583
|| ||||| ||| | || |||||| || |||||||| || | || ||| ||| ||||
Sbjct 6586845 CAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTC 6586786
Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643
||||||||||| || ||||| |||| || |||||| || | ||||| || || |||||
Sbjct 6586785 TTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGAGGAATGCCTTCTTTGTC 6586726
Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703
| |||||| ||||| | | | | ||||| || | || ||||| | ||||| ||
Sbjct 6586725 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 6586666
Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| || |||| || ||||| || ||||||||
Sbjct 6586665 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 6586633
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450661320253000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |