Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq1781 132 7e-26
seq2929 125 1e-23
seq1 84.2 3e-11
>seq1781
Length=149560735
Score = 132 bits (146), Expect = 7e-26
Identities = 111/136 (82%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| ||||| | ||| || || || || | ||||||||| || || | ||| |
Sbjct 129690759 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 129690818
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| ||||||||||| |||||||| || || ||||||||||||||||| ||||| ||||| |
Sbjct 129690819 TCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 129690878
Query 39759 CAACAAGTCTCTCTCC 39774
|||| | |||||| ||
Sbjct 129690879 CAACCACTCTCTCACC 129690894
Score = 86.0 bits (94), Expect = 9e-12
Identities = 56/62 (90%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853
||||||||| | ||||| || ||||||||||| ||||||||||||||||| |||||||||
Sbjct 129693096 ATCCACTTCAGAGCCCAGTCTGCTTTCTTCTTGACACAAGGCATTGTTTCAATAGCATTA 129693155
Query 39854 AA 39855
||
Sbjct 129693156 AA 129693157
>seq2929
Length=111302122
Score = 125 bits (138), Expect = 1e-23
Identities = 102/124 (82%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| || || | || |||||||| |||||||||||||||| || | || |
Sbjct 96934804 CCTCATCTCTGCTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCT 96934745
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| |||||||| || | |||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 96934744 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATG 96934685
Query 39759 CAAC 39762
| ||
Sbjct 96934684 CTAC 96934681
Score = 96.9 bits (106), Expect = 5e-15
Identities = 79/96 (82%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 39310 TGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCC 39369
|||||| |||||||| | || |||||||| || |||||||| || ||||| || |||||
Sbjct 96936069 TGACATCACTCCCATCCTCTGATATTCACCTACTCGTTTCTCAAAGAAATTGGTCTTGCC 96936010
Query 39370 TTCCAATGATATATTTTCCATGAAATCAAACGGATT 39405
||||| || || || |||||||||||||| |||||
Sbjct 96936009 TTCCAGAGAGATGTTCTCCATGAAATCAAAAGGATT 96935974
Score = 93.3 bits (102), Expect = 6e-14
Identities = 79/96 (82%), Gaps = 1/96 (1%)
Strand=Plus/Minus
Query 39310 TGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCC 39369
|||||| |||||||| | || |||||||| || |||||||| || ||||| || |||||
Sbjct 96947393 TGACATCACTCCCATCCTCTGATATTCACCTACTCGTTTCTC-AAGAAATTGGTCTTGCC 96947335
Query 39370 TTCCAATGATATATTTTCCATGAAATCAAACGGATT 39405
||||| || || || |||||||||||||| |||||
Sbjct 96947334 TTCCAGAGAGATGTTCTCCATGAAATCAAAAGGATT 96947299
Score = 84.2 bits (92), Expect = 3e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936
||| |||| ||||| || || | ||||| |||||||||||||| |||||||| || ||
Sbjct 96933158 ATCCTTAATGTATGTGTCAATGAGAAGACTGTACATTTCTGAATGTATGTTTTCCATGGC 96933099
Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982
||||| || || || ||||||| ||||| || | ||| || |||
Sbjct 96933098 AATCTGGAAGCCATAGAAACATCGCGCTTCCGTGACTTGCACTTCT 96933053
>seq1
Length=196202544
Score = 84.2 bits (92), Expect = 3e-11
Identities = 121/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500
|||| || ||||| ||||| || || |||||| ||| | || || || || || || |
Sbjct 194678227 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGTTCTGCGATGTGGATGT 194678286
Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560
| | ||||| || || || |||||||||||||| ||||| ||||| || | | | | |
Sbjct 194678287 TGAGAGATTGGCTCTGGTCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGACAGTTT 194678346
Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611
| || | || ||||| | |||||| | | ||| || | ||| | ||||
Sbjct 194678347 TCTGGGAGATCTCCCACACTGTCTTATAGAGCTGCTTCAAGTCAGCAGGAA 194678397
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686707235199000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |