Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq1781 131 1e-25
seq2929 105 5e-18
>seq1781
Length=149560735
Score = 131 bits (144), Expect = 1e-25
Identities = 123/157 (78%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106
||||||| ||||||||||| ||| | || ||||| || ||| |||||||||||||
Sbjct 102230868 TGATGGCTTTGCCACCTTGCCATGCTCTTTGCCAGTTCTATGTTCTAAATGGTGAACTGT 102230809
Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166
| || ||| ||||||| || || || || ||||||||||| || || || ||||| || |
Sbjct 102230808 CTTGCCAACTGTATCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAACATCGCCA 102230749
Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203
| ||| | |||||||| || |||||||| ||||| ||
Sbjct 102230748 GCTATTCGCTGCTCACATACATGATTGCCCACGTCAC 102230712
>seq2929
Length=111302122
Score = 105 bits (116), Expect = 5e-18
Identities = 88/108 (81%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972
|||||||| ||| | | ||||| |||||||| ||||| || || |||||||| |||||
Sbjct 96933051 CAAGAAGTGCAAGTCACGGAAGCGCGATGTTTCTATGGCTTCCAGATTGCCATGGAAAAC 96933110
Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
|| ||||| ||||||||||||||||| || || || ||||| || |||
Sbjct 96933111 ATACATTCAGAAATGTACAGTCTTCTCATTGACACATACATTAAGGAT 96933158
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397342287217375
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |