Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1781 131 1e-25 seq2929 105 5e-18 >seq1781 Length=149560735 Score = 131 bits (144), Expect = 1e-25 Identities = 123/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||||||||| ||| | || ||||| || ||| ||||||||||||| Sbjct 102230868 TGATGGCTTTGCCACCTTGCCATGCTCTTTGCCAGTTCTATGTTCTAAATGGTGAACTGT 102230809 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| ||||||| || || || || ||||||||||| || || || ||||| || | Sbjct 102230808 CTTGCCAACTGTATCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAACATCGCCA 102230749 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||||||| || |||||||| ||||| || Sbjct 102230748 GCTATTCGCTGCTCACATACATGATTGCCCACGTCAC 102230712 >seq2929 Length=111302122 Score = 105 bits (116), Expect = 5e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| ||| | | ||||| |||||||| ||||| || || |||||||| ||||| Sbjct 96933051 CAAGAAGTGCAAGTCACGGAAGCGCGATGTTTCTATGGCTTCCAGATTGCCATGGAAAAC 96933110 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| ||||||||||||||||| || || || ||||| || ||| Sbjct 96933111 ATACATTCAGAAATGTACAGTCTTCTCATTGACACATACATTAAGGAT 96933158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397342287217375