Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq4328 288 3e-72 seq7078 203 1e-46 seq6642 158 4e-33 seq6387 116 1e-20 seq6492 113 1e-19 seq2929 84.2 7e-11 >seq4328 Length=59825302 Score = 288 bits (318), Expect = 3e-72 Identities = 552/806 (68%), Gaps = 12/806 (1%) Strand=Plus/Plus Query 349515 AACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAA 349574 |||||||||| || | || ||||||||||| | ||||| | || ||||| |||| Sbjct 15970294 AACAAAAACATTTGCT-CCTGAAGAAATTTCTGCCATGGTCCTGACAAAGATGAAAGAAA 15970352 Query 349575 TTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATT 349634 ||| || || ||| | || | | ||| ||| |||||||| ||||||| |||||||| | Sbjct 15970353 CTGCAGAGGCTTATCTGGGCAAGAAAGTTACTCATGCTGTTGTTACTGTGCCAGCCTACT 15970412 Query 349635 TTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTC 349694 | |||||||| |||||| || |||||||||||||| | |||||| ||||| || || Sbjct 15970413 TCAATGATGCTCAGCGTCAGGCCACAAAAGATGCTGGTACCATTGCTGGGTTGAACGTGA 15970472 Query 349695 TAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTG 349754 | | || |||||||| || |||||||| ||||||||||| || | || || ||| | Sbjct 15970473 TGCGCATTATTAATGAGCCAACTGCTGCTGCAATTGCATACGGATTGGACAA---GAGAG 15970529 Query 349755 ACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTAC 349814 | ||||| || || ||| | ||||| | |||||||| ||||||||||| || || | Sbjct 15970530 AGGGTGAAAAGAACATCCTTGTATTTGACCTGGGTGGTGGAACTTTTGATGTCTCCCTCC 15970589 Query 349815 TAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTG 349874 | ||| |||| | ||| | ||||||||| || || |||||| ||||| || |||| Sbjct 15970590 TGACAATTGACAACGGAGTCTTTGAAGTTGTGGCTACAAATGGTGACACACACCTGGGTG 15970649 Query 349875 GAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTA 349934 ||||||| ||||| | ||| | | ||| || | ||| | ||| || | Sbjct 15970650 GAGAAGACTTTGACCAGCGTGTTATGGAGCACTTCATCAAACTCTACAAGAAGAAAACAG 15970709 Query 349935 AAATTGATAT-TGGA--GATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGT-GAA 349990 || ||| | ||| ||||| ||||| | | ||||| || | || || Sbjct 15970710 GAAAAGATGTCAGGAAGGATAA---CAGAGCTGTACAGAAACTAAG-ACGGGAAGTAGAG 15970765 Query 349991 CGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCT 350050 || ||||| || | ||||| |||| | |||||||| || || || | Sbjct 15970766 AAAGCGAAGCGGGCCCTGTCATCCCAGCACCAAGCTAGAATTGAAATAGAATCCTTTTTT 15970825 Query 350051 GATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGAT 350110 || || | ||||||| | | |||| ||||| ||||||||| | ||||||| Sbjct 15970826 GAAGGAGAGGATTTCTCTGAGACGCTTACTCGTGCCAAATTTGAAGAACTGAATATGGAT 15970885 Query 350111 CTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAA 350170 || || | | || ||| | ||||| | ||||| | |||| | | | || Sbjct 15970886 CTGTTCCGTTCTACGATGAAGCCTGTTCAGAAAGTTCTGGAAGACTCTGACCTAAAGAAG 15970945 Query 350171 AATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAG 350230 | | |||||||| | ||| | |||||||||||||| || || || ||| | ||||| Sbjct 15970946 TCTGATATTGATGAGATTGTTCTTGTTGGTGGTTCTACTCGCATCCCCAAAATACAACAA 15971005 Query 350231 TTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCT 350290 | | ||||| || ||||| ||||| |||||| | |||||||||||||| ||| Sbjct 15971006 CTTGTTAAAGAGTTCTTCAATGGGAAAGAGCCTTCTCGTGGCATTAATCCAGATGAGGCT 15971065 Query 350291 GTTGCATATGGTGCTGCTGTTCAGGC 350316 || || |||||||| ||||||||||| Sbjct 15971066 GTAGCCTATGGTGCAGCTGTTCAGGC 15971091 Score = 288 bits (318), Expect = 3e-72 Identities = 949/1460 (65%), Gaps = 33/1460 (2%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 || || || |||||| | || || || |||||||| || | ||| | || ||| Sbjct 52954747 GCCATCGGCATCGATCTGGGCACCACGTATTCTTGCGTGGGTGTCTTCCAGCATGGCAAA 52954688 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || || ||||| || || || || ||| | || || || || || || || ||| Sbjct 52954687 GTGGAGATCATTGCCAACGACCAGGGGAACCGCACCACACCCAGCTATGTGGCCTTCACC 52954628 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || ||||| | || || ||| |||| || || |||| || || || | || Sbjct 52954627 GATACAGAGCGCCTCATCGGGGATGCTGCCAAGAACCAAGTGGCAATGAACCCCACCAAC 52954568 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACA---CAA 349435 || | |||||||| ||||| || || || | | | | |||| | ||| || Sbjct 52954567 ACCATCTTTGATGCCAAGCGTCTCATCGGCCGCAAGTATGATGACC---CCACAGTGCAG 52954511 Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT 349495 || || | || || | || || ||| || || || |||| || || | | Sbjct 52954510 TCGGACATGAAGCACTGGCCCTTCCGTGTGGTG---AACGAGGGTGGCAAGCCCAAGGTG 52954454 Query 349496 GAGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGT 349554 |||| || || || ||||| | || || || || || || || || || ||||| Sbjct 52954453 CAGGTGGAGTACAAGGGTGAGATGAAGACC-TTCTTCCCAGAGGAGATCAGCTCTATGGT 52954395 Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614 | || |||||||| |||||||| || ||| | || ||| ||| ||||||| Sbjct 52954394 GCTCACCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGAAAAAAGGTACAGAATGCTGT 52954335 Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674 ||| || || || || || || || || ||||||| || || ||||||||||||| Sbjct 52954334 TATCACAGTGCCCGCTTACTTCAACGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCAC 52954275 Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734 ||| | || | || || | | || || ||||| ||||| || || || ||||| || Sbjct 52954274 CATCACTGGCCTTAACGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTATTGCCTA 52954215 Query 349735 TGGGCTTGATAAAATGAGTGACC------AAGaaaaaaaTATTCTTATTTTTGATTTAGG 349788 ||| | ||||| | || || ||| || ||| | || || ||||| || || Sbjct 52954214 TGGCTTGGATAAGAAAGGTACCCGGGCTGGAGAGAAGAATGTGCTCATCTTTGACTTGGG 52954155 Query 349789 TGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGC 349848 || || ||||||||||| || | || || |||| || || || ||||| || ||| | Sbjct 52954154 AGGGGGCACTTTTGATGTGTCCATCCTTACCATTGAGGATGGCATCTTTGAGGTGAAATC 52954095 Query 349849 AACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTT 349908 || || ||||| || || || ||||| || || ||||| || || | || ||||| Sbjct 52954094 CACAGCAGGTGACACCCACCTGGGTGGGGAGGACTTTGACAACCGAATGGTAAACCATTT 52954035 Query 349909 TGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGC 349967 ||| |||| || |||||| |||| || ||| |||| | ||| ||||| || Sbjct 52954034 TGTAGAAGAGTTCAAGCGT-AAGCACAAGCGTGACATTGCTGGCAATAAGCGAGCAGTGA 52953976 Query 349968 GTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTC-CTTATCATCTACTACCCAAACC 350026 | || || | || || ||||| | || |||||| | || | | ||| | || ||| || Sbjct 52953975 GGCGTCTGCGTACAGCTTGTGAGAGGGCGAAGCGTACTCTGAGC-TCTTCCACGCAAGCC 52953917 Query 350027 TCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCT 350086 ||||| ||||| || || ||| |||| || |||| | || || || ||||| Sbjct 52953916 AGCATTGAGATTGACTCCCTCTTTGAGGGCATTGACTTCTACACCTCCATCACTCGTGCC 52953857 Query 350087 CGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTA 350146 || ||||| ||| | | |||||||| | | || |||| || ||||| || | Sbjct 52953856 CGCTTTGAGGAACTCAATGCTGATCTTTTCCGTGGTACCCTGGAGCCAGTGGAGAAGGCC 52953797 Query 350147 TTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCT 350206 | ||||| || | || ||||| | || | || | || || || || Sbjct 52953796 CTGCGTGATGCCAAGCTTGATAAGGGCCAGATCCAGGAGATTGTGCTTGTGGGGGGCTCC 52953737 Query 350207 ACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTC 350265 || |||||||| || | || |||| || || || || ||||||||||| | | Sbjct 52953736 ACTCGTATTCCTAAGATCCAGAAGTTGCTGCAAGATTTCTTCAATGGCAAAGAGCTGAAC 52953677 Query 350266 TAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTT 350325 ||| | || |||||||||||||||||||| |||||||| ||||| || ||| |||| | Sbjct 52953676 AAGAGC-ATCAATCCAGATGAAGCTGTTGCTTATGGTGCCGCTGTGCAAGCAGCTATCCT 52953618 Query 350326 ATCTGGAAATAAGAGTTCTAAAATTG---ATGATCTATTACTACTAGATGTAACTCCACT 350382 ||| | ||| ||| ||| || | ||||| | || | ||||| || || || Sbjct 52953617 CATGGGAGACAAG---TCTGAAAATGTGCAAGATCTGCTCCTGTTGGATGTCACCCCCCT 52953561 Query 350383 TTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTAC 350442 || || || | || || |||||| ||| ||||||| ||| || | || | || Sbjct 52953560 GTCCCTGGGCATCGAGACAGCTGGTGGAGTGATGACTGCTCTCATCAAGCGTAACACCAC 52953501 Query 350443 TGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAAC 350502 | || || ||| | | || || || | || | |||| || ||| ||| || | Sbjct 52953500 CATTCCCACCAAACAAACACAGACCTTCACCACCTACTCAGACAACCAG--AGCAGTGTC 52953443 Query 350503 --AATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAA 350560 | || |||| |||||| ||||||||| ||||| || || || || || | Sbjct 52953442 CTCGTCCAGGTATATGAAGGAGAACGTGCTATGACTAAGGACAACAACTTGCTGGGCAAG 52953383 Query 350561 TTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTC 350620 ||| ||||| | || || ||| || | |||||||||||||| || ||| |||| Sbjct 52953382 TTTGACCTAACAGGCATCCCCCCAGCACCCCGTGGAGTTCCTCAGATCGAGGTCACTTTT 52953323 Query 350621 GATATTGATTCAAATGGTAT 350640 || || ||| | |||||||| Sbjct 52953322 GACATAGATGCTAATGGTAT 52953303 Score = 105 bits (116), Expect = 2e-17 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 183250 CAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATT 183309 |||| ||||||||||||||||| || ||||| |||||||| ||||| |||||| | Sbjct 15971093 CAGCCTGAACAGCTGCACCATAGGCTACAGCCTCATCTGGATTAATGCCACGAGAAGGCT 15971034 Query 183310 CTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369 |||| ||||| || || ||| || | |||||| ||||| || || | ||| ||||||| Sbjct 15971033 CTTTCCCATTGAAGAACTCTTTAACAAGTTGTTGTATTTTGGGGATGCGAGTAGAACCAC 15970974 Query 183370 CGACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTT 183429 | || | || | ||||| |||| | || | | | || |||| | |||||| | Sbjct 15970973 CAACAAGAACAATCTCATCAATATCAGACTTCTTTAGGTCAGAGTCTTCCAGAACTTTCT 15970914 Query 183430 CAACAGGGTCCATAGT 183445 |||||| | ||| || Sbjct 15970913 GAACAGGCTTCATCGT 15970898 >seq7078 Length=6280547 Score = 203 bits (224), Expect = 1e-46 Identities = 374/541 (69%), Gaps = 12/541 (2%) Strand=Plus/Plus Query 349770 TTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGG 349829 ||||||||||||| | || ||||| || |||||||| ||| | || || ||||||| | Sbjct 3075462 TTCTTATTTTTGACCTTGGAGGTGGCACCTTTGATGTGTCAATTCTGACTATTGAAGATG 3075521 Query 349830 GAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATA 349889 | || ||||| || ||| | ||||| ||||| || ||| | ||||||||||||||||| | Sbjct 3075522 GCATCTTTGAGGTGAAATCCACTGCAGGTGACACTCATTTGGGTGGAGAAGATTTTGACA 3075581 Query 349890 ATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGA 349948 | || | || || || || ||||| ||||| ||||| || | || || | Sbjct 3075582 ACCGCATGGTCAACCACTTCATTGCTGAATTCAAGCG-CAAGCACAAGAAAGACATCAGT 3075640 Query 349949 GATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTA 350008 || || |||||| | |||||||| | ||||| ||||||||||| |||||| || | Sbjct 3075641 GAGAACAAGAGAGCAGTTCGTCGCCTTCGTACTGCATGTGAACGTGCAAAGCGTACCCTG 3075700 Query 350009 TCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTT 350068 ||||| | || ||| || ||||||||| |||||||| ||| || | || |||| Sbjct 3075701 TCATCAAGCACACAAGCCAGTATTGAAATCGATTCTCTCTATGAGGGTATTGACTTCTAC 3075760 Query 350069 TCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATG--GATCTTTTTAGAGCAACAA 350126 |||| || || | ||||| || ||||| || ||| || || || | | || Sbjct 3075761 ACATCGATCACCAGAGCTCGCTTCGAAGA--GCTGAATGCTGACCTGTTCCGTGGCACCC 3075818 Query 350127 TGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAG 350186 ||||||||||||| || | | ||||| || | ||| ||||| |||| Sbjct 3075819 TGGATCCTGTGGAGAAGGCCCTGCGGGATGCCAAGCTAGACAAGTCACAGATCCATGACA 3075878 Query 350187 TAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTT 350246 | || | ||||| || ||||| || || ||||| |||| | | || || || | Sbjct 3075879 TTGTGCTGGTTGGGGGGTCTACCCGCATCCCAAAGATTCAGAAACTGCTGCAAGACTTCT 3075938 Query 350247 TTAATGGCAAAGAACCTT---CTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTG 350303 | || |||||||| || | ||| | || ||||| ||||||||||| || ||||||| Sbjct 3075939 TCAACGGCAAAGA--GTTGAACAAGAGC-ATCAATCCTGATGAAGCTGTGGCTTATGGTG 3075995 Query 350304 C 350304 | Sbjct 3075996 C 3075996 Score = 159 bits (176), Expect = 1e-33 Identities = 359/533 (67%), Gaps = 6/533 (1%) Strand=Plus/Minus Query 183262 CTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGAT-AATTCTTTGCCATTA 183320 |||||||||| || ||||||||||| || || || | | | | || |||||||| || Sbjct 3075998 CTGCACCATAAGCCACAGCTTCATCAGGATTGAT-GCTCTTGTTCAACTCTTTGCCGTTG 3075940 Query 183321 AAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATACT 183380 || || ||| |||| || ||||| ||||| || | || || || || || | || Sbjct 3075939 AAGAAGTCTTGCAGCAGTTTCTGAATCTTTGGGATGCGGGTAGACCCCCCAACCAGCACA 3075880 Query 183381 ACTTCATCGATATT--ACTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGGT 183438 | |||| ||| | |||| | ||| ||| | ||| | | || || ||||| | Sbjct 3075879 ATGTCATGGATCTGTGACTTGT-CTAGCTTG-GCATCCCGCAGGGCCTTCTCCACAGGAT 3075822 Query 183439 CCATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAAGATG 183498 ||| || | || | || | | |||||| || | ||||| || | |||| Sbjct 3075821 CCAGGGTGCCACGGAACAGGTCAGCATTCAGCTCTTCGAAGCGAGCTCTGGTGATCGATG 3075762 Query 183499 aaaaaaaGTCAATACCATTATATAAGGAATCAATTTCAATCGATGTTTGTGTAGATGATG 183558 | ||||||||||| | ||| | ||||| |||||||| | |||||| ||||| Sbjct 3075761 TGTAGAAGTCAATACCCTCATAGAGAGAATCGATTTCAATACTGGCTTGTGTGCTTGATG 3075702 Query 183559 ATAATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTAT 183618 | | || | || || ||||||||||| || | || ||||| | || ||| || | Sbjct 3075701 ACAGGGTACGCTTTGCACGTTCACATGCAGTACGAAGGCGACGAACTGCTCTCTTGTTCT 3075642 Query 183619 CTGTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTTG 183678 | | || |||| || || || | || ||||||| ||| || || | | | | Sbjct 3075641 CACTGATGTCTTTCTTGTGCTTGCGCTTGAATTCAGCAATGAAGTGGTTGACCATGCGGT 3075582 Query 183679 TATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTC 183738 | ||||||||||| ||||| ||||| || || || ||||| | ||| || ||||| || | Sbjct 3075581 TGTCAAAATCTTCTCCACCCAAATGAGTGTCACCTGCAGTGGATTTCACCTCAAAGATGC 3075522 Query 183739 CGTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAAA 183791 | ||||||||| | | |||||| |||||||| || ||||| || | |||||| Sbjct 3075521 CATCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAA 3075469 Score = 120 bits (132), Expect = 9e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 349598 ACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCA 349657 || |||||| ||||||| | |||||||||||||||||||| || ||||||| || Sbjct 3075186 ACTGTAACTAATGCTGTAGTCACTGTACCAGCCTATTTTAACGACTCCCAGCGACAGGCC 3075245 Query 349658 ACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACT 349717 |||||||||||||| | |||||| ||| | ||||| || |||| || ||||| || || Sbjct 3075246 ACAAAAGATGCTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAATGAGCCAACA 3075305 Query 349718 GCTGCAGCAATTGCATATGGGCTTGATAA 349746 ||||| || || || || || || ||||| Sbjct 3075306 GCTGCTGCTATAGCCTACGGTCTGGATAA 3075334 >seq6642 Length=9979828 Score = 158 bits (174), Expect = 4e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || ||||| || || ||||| || || || || || ||||| | || ||||||||| Sbjct 6586388 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 6586329 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| | | ||||||||||||||||| |||||||||||| Sbjct 6586328 TCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATGCCTTCTTTATCC 6586269 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| |||||||| || || || | ||| Sbjct 6586268 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCAACCTCGAGGGTGATGGTC 6586209 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 6586208 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 6586177 Score = 140 bits (154), Expect = 1e-27 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || ||||| || || ||||| || || || || || ||||| | || ||||| ||| Sbjct 6586844 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 6586785 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || |||||||| || || | ||||||||||||||||| |||||||| ||| Sbjct 6586784 TCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGAGGAATGCCTTCTTTGTCC 6586725 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| || ||||| || || || | ||| Sbjct 6586724 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 6586665 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || || || |||||||| Sbjct 6586664 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 6586633 Score = 134 bits (148), Expect = 4e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || ||||| || || |||||||| || || || || ||||| | || ||||| ||| Sbjct 6586616 AGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 6586557 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| | | |||||||| |||||||| |||||||| || Sbjct 6586556 TCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCT 6586497 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| || ||||| || || || | ||| Sbjct 6586496 TGGATCTTGGCCTTCACATTTTCAATTGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 6586437 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| || || |||||||| Sbjct 6586436 TTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 6586405 Score = 131 bits (144), Expect = 5e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || ||||| || || ||||| || || || || || ||||| | || ||||| ||| Sbjct 6586160 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 6586101 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| | | |||||||| |||||||| ||||| || || Sbjct 6586100 TCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCT 6586041 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| || ||||| || || || | ||| Sbjct 6586040 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 6585981 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 6585980 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 6585949 >seq6387 Length=12762846 Score = 116 bits (128), Expect = 1e-20 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || ||||| || || ||||| || || || || || || || | || ||||||||| Sbjct 4540395 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCATCT 4540336 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | |||||||| || ||||| || || || ||| Sbjct 4540335 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCC 4540276 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || ||||| | ||| || || || || || || | ||| Sbjct 4540275 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTC 4540216 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | || || ||||| |||||||| Sbjct 4540215 TTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 4540184 Score = 107 bits (118), Expect = 6e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || || || ||||| || || || || || ||||| | || || |||||| Sbjct 4540623 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 4540564 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | || ||||| || ||||| || || || ||| Sbjct 4540563 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGATCGGGGGGAATGCCCTCCTTGTCC 4540504 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || ||||| | || ||||| || || || || | ||| Sbjct 4540503 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTC 4540444 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | || || ||||| |||||||| Sbjct 4540443 TTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 4540412 >seq6492 Length=10956400 Score = 113 bits (124), Expect = 1e-19 Identities = 129/173 (75%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 |||||||| ||||||||||| || | || || ||| || ||||| || || ||| Sbjct 10079449 ACTGCTGCTGCAATTGCATACGGATTGGACAA---GAGAGAGGGTGAAAAGAACATCCTT 10079393 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 | ||||| | |||||||| ||||||||||| || || || ||| |||| | ||| | Sbjct 10079392 GTATTTGACCTGGGTGGTGGAACTTTTGATGTCTCCCTCCTGACAATTGACAACGGAGTC 10079333 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 ||||||||| || || |||||| ||||| || ||||||||||| ||||| Sbjct 10079332 TTTGAAGTTGTGGCTACAAATGGTGACACACACCTGGGTGGAGAAGACTTTGA 10079280 Score = 109 bits (120), Expect = 2e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 |||||||| | ||| | |||||||||||||| || || || ||| | ||||| | | Sbjct 10078672 ATTGATGAGATTGTTCTTGTTGGTGGTTCTACTCGCATCCCCAAAATACAACAACTTGTT 10078613 Query 350237 TCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCA 350296 ||||| || ||||| ||||| |||||| | |||||||||||||| ||||| || Sbjct 10078612 AAAGAGTTCTTCAATGGGAAAGAGCCTTCTCGTGGCATTAATCCAGATGAGGCTGTAGCC 10078553 Query 350297 TATGGTGCTGCTGTTCAGGC 350316 |||||||| ||||||||||| Sbjct 10078552 TATGGTGCAGCTGTTCAGGC 10078533 Score = 105 bits (116), Expect = 2e-17 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 183250 CAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATT 183309 |||| ||||||||||||||||| || ||||| |||||||| ||||| |||||| | Sbjct 10078531 CAGCCTGAACAGCTGCACCATAGGCTACAGCCTCATCTGGATTAATGCCACGAGAAGGCT 10078590 Query 183310 CTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369 |||| ||||| || || ||| || | |||||| ||||| || || | ||| ||||||| Sbjct 10078591 CTTTCCCATTGAAGAACTCTTTAACAAGTTGTTGTATTTTGGGGATGCGAGTAGAACCAC 10078650 Query 183370 CGACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTT 183429 | || | || | ||||| |||| | || | | | || |||| | |||||| | Sbjct 10078651 CAACAAGAACAATCTCATCAATATCAGACTTCTTTAGGTCAGAGTCTTCCAGAACTTTCT 10078710 Query 183430 CAACAGGGTCCATAGT 183445 |||||| | ||| || Sbjct 10078711 GAACAGGCTTCATCGT 10078726 Score = 96.9 bits (106), Expect = 1e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 349601 GTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACA 349660 || ||| |||||||| ||||||| |||||||| || |||||||| |||||| || ||| Sbjct 10079651 GTTACTCATGCTGTTGTTACTGTGCCAGCCTACTTCAATGATGCTCAGCGTCAGGCCACA 10079592 Query 349661 AAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACC 349713 ||||||||||| | ||||| ||||| || || | | || |||||||| || Sbjct 10079591 AAAGATGCTGGTACTATTGCTGGGTTGAACGTGATGCGCATTATTAATGAGCC 10079539 >seq2929 Length=111302122 Score = 84.2 bits (92), Expect = 7e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607 |||| || ||||| || ||||| | || || |||||||| || || || |||||||| | Sbjct 48326 CTTTCTGGATATTGTAGTCAGACAGCGTGCGGCCATCTTCCAGCTGCTTCCCAGCAAAAA 48267 Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCT 140636 | || || ||||||||||||||||||||| Sbjct 48266 TCAGTCGCTGCTGATCAGGAGGAATTCCT 48238 Score = 84.2 bits (92), Expect = 7e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 223722 CCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCTTTT 223781 |||||||||| || | ||||| ||||| || | |||||||||||| ||||| || | Sbjct 96934804 CCTCATCTCTGCTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCT 96934745 Query 223782 TCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAAACG 223841 ||| |||||| |||| ||||| || ||||| || || ||||| || ||||| | Sbjct 96934744 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATG 96934685 Query 223842 CTACTA 223847 |||||| Sbjct 96934684 CTACTA 96934679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514798651725425