Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq7246 86.0 7e-12 seq3196 84.2 2e-11 seq1781 84.2 2e-11 >seq7246 Length=5655794 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || ||||||||||| | ||| || | ||||| ||||| ||||| || |||||||| Sbjct 4848507 GTAAAGATGTATCGAGGGCTTGCAGAGTCCTTCCCACCATGCAGCCTTGTGCCAAACTGA 4848566 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || ||||| || |||||||||||||| |||||| || |||||||| | || | | Sbjct 4848567 CCGATGGGCTGCAGCAGGTTGAGGTTGTTACTGCCCACAAAGTTCTGAGCTAGGTTTATA 4848626 Query 152149 ATCGT 152153 ||||| Sbjct 4848627 ATCGT 4848631 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || || ||||| |||| |||||||| ||||| |||||| || | || || || || Sbjct 4848507 GTAAAGATGTATCGAGGGCTTGCAGAGTCCTTCCCACCATGCAGCCTTGTGCCAAACTGA 4848566 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | |||| || ||||| |||||||| |||||||||||| ||||| | ||| | | Sbjct 4848567 CCGATGGGCTGCAGCAGGTTGAGGTTGTTACTGCCCACAAAGTTCTGAGCTAGGTTTATA 4848626 Query 117425 ATCGT 117429 ||||| Sbjct 4848627 ATCGT 4848631 >seq3196 Length=7661 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 ||||||||| || |||| ||| ||||||||||| |||||| ||| | ||||| || || Sbjct 5665 AGTGAAAATATAGCGAGGGCTGGCAGCATCCTTTCCACCATGAAGCCTGGTACCAAACTG 5606 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 ||| | || | | || || | ||||| || || ||||| |||||||||||||| Sbjct 5605 ACCAATAGGTTGTAGAAGATTAACATTGTTACTTCCAACGAAGTTCTGAGCCAAGTTGAC 5546 Query 117424 AATCGT 117429 ||| || Sbjct 5545 AATAGT 5540 >seq1781 Length=149560735 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 ||||||||| || |||| ||| ||||||||||| |||||| ||| | ||||| || || Sbjct 37996184 AGTGAAAATATAGCGAGGGCTGGCAGCATCCTTTCCACCATGAAGCCTGGTACCAAACTG 37996243 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 ||| | || | | || || | ||||| || || ||||| |||||||||||||| Sbjct 37996244 ACCAATAGGTTGTAGAAGATTAACATTGTTACTTCCAACGAAGTTCTGAGCCAAGTTGAC 37996303 Query 117424 AATCGT 117429 ||| || Sbjct 37996304 AATAGT 37996309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547055426305000