Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq7246 86.0 7e-12
seq3196 84.2 2e-11
seq1781 84.2 2e-11
>seq7246
Length=5655794
Score = 86.0 bits (94), Expect = 7e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|| ||||||||||| | ||| || | ||||| ||||| ||||| || ||||||||
Sbjct 4848507 GTAAAGATGTATCGAGGGCTTGCAGAGTCCTTCCCACCATGCAGCCTTGTGCCAAACTGA 4848566
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
|| ||||| || |||||||||||||| |||||| || |||||||| | || | |
Sbjct 4848567 CCGATGGGCTGCAGCAGGTTGAGGTTGTTACTGCCCACAAAGTTCTGAGCTAGGTTTATA 4848626
Query 152149 ATCGT 152153
|||||
Sbjct 4848627 ATCGT 4848631
Score = 82.4 bits (90), Expect = 8e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|| || ||||| |||| |||||||| ||||| |||||| || | || || || ||
Sbjct 4848507 GTAAAGATGTATCGAGGGCTTGCAGAGTCCTTCCCACCATGCAGCCTTGTGCCAAACTGA 4848566
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
|| | |||| || ||||| |||||||| |||||||||||| ||||| | ||| | |
Sbjct 4848567 CCGATGGGCTGCAGCAGGTTGAGGTTGTTACTGCCCACAAAGTTCTGAGCTAGGTTTATA 4848626
Query 117425 ATCGT 117429
|||||
Sbjct 4848627 ATCGT 4848631
>seq3196
Length=7661
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363
||||||||| || |||| ||| ||||||||||| |||||| ||| | ||||| || ||
Sbjct 5665 AGTGAAAATATAGCGAGGGCTGGCAGCATCCTTTCCACCATGAAGCCTGGTACCAAACTG 5606
Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423
||| | || | | || || | ||||| || || ||||| ||||||||||||||
Sbjct 5605 ACCAATAGGTTGTAGAAGATTAACATTGTTACTTCCAACGAAGTTCTGAGCCAAGTTGAC 5546
Query 117424 AATCGT 117429
||| ||
Sbjct 5545 AATAGT 5540
>seq1781
Length=149560735
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363
||||||||| || |||| ||| ||||||||||| |||||| ||| | ||||| || ||
Sbjct 37996184 AGTGAAAATATAGCGAGGGCTGGCAGCATCCTTTCCACCATGAAGCCTGGTACCAAACTG 37996243
Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423
||| | || | | || || | ||||| || || ||||| ||||||||||||||
Sbjct 37996244 ACCAATAGGTTGTAGAAGATTAACATTGTTACTTCCAACGAAGTTCTGAGCCAAGTTGAC 37996303
Query 117424 AATCGT 117429
||| ||
Sbjct 37996304 AATAGT 37996309
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547055426305000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |