Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq6642 167 3e-36 seq6387 154 2e-32 >seq6642 Length=9979828 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || ||||||||| | || Sbjct 6586633 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 6586692 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| || || |||||||| || || |||||||| || ||| Sbjct 6586693 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGATCAG 6586752 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || ||||||||||| ||||| || || || | || ||||| | ||||| || Sbjct 6586753 CAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 6586812 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| || |||| || | ||||| Sbjct 6586813 ATCCAGAAGGAGTCCACCCTGCATCTGGTGCTGCGCCTCAGGGGTGG 6586859 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || |||||||| | || Sbjct 6586177 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAACCCAGT 6586236 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| || || ||||| || || || |||||||| || ||| Sbjct 6586237 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGATCAG 6586296 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || |||||||||||||| || || |||| || ||||| | ||||| || Sbjct 6586297 CAGAGGTTGATCTTTGCTGGTAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 6586356 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| || |||| || | ||||| Sbjct 6586357 ATCCAGAAGGAGTCCACCCTGCATCTGGTGCTGCGCCTGAGAGGTGG 6586403 >seq6387 Length=12762846 Score = 154 bits (170), Expect = 2e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || |||||||| || || || ||||| ||| | || Sbjct 4540184 ATGCAGATCTTTGTGAAGACCTTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAGT 4540243 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || |||||||||||||| ||||| || || ||| Sbjct 4540244 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGATCAG 4540303 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || || || | ||||| || Sbjct 4540304 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACTCTGTCCGACTACAAC 4540363 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || ||||| || |||| || Sbjct 4540364 ATCCAGAAGGAGTCCACCCTGCATCTGGTGCTGCGCCT 4540401 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || | ||||| || | || Sbjct 4539956 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTGGAACCCAGT 4540015 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| | ||||| || || |||||||||||||| ||||| || || ||| Sbjct 4540016 GATACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGATCAG 4540075 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || ||||| ||||| || || || | || ||||| | ||||| || Sbjct 4540076 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTACAAC 4540135 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| ||||| ||| |||| || | ||||| Sbjct 4540136 ATCCAGAAGGAGTCCACTCTCCATCTTGTCCTGCGCCTCAGGGGTGG 4540182 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || |||||||| || || || ||||| || | | Sbjct 4540412 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAGGTGGAACCCAGC 4540471 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || |||||||||||||| ||||| || || || Sbjct 4540472 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGATCAA 4540531 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 4540532 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAAC 4540591 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || |||| || | ||||| Sbjct 4540592 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTCAGGGGTGG 4540638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570143049542000