Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_028379.1
Length=205896
Score E
Sequences producing significant alignments: (Bits) Value
seq5650 325 5e-84
>seq5650
Length=20435342
Score = 325 bits (360), Expect = 5e-84
Identities = 645/948 (68%), Gaps = 24/948 (3%)
Strand=Plus/Minus
Query 13608 GACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGTATCTCGTG 13667
|| ||| ||||||||||| ||||||| |||| | | | || | || |||
Sbjct 5343435 GAGTACCTGAACATGACGAAGGACTGCGGCAGCTTCAAGGAGAGCCGGCGCTACATCGAC 5343376
Query 13668 AGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCAC 13727
|| |||||| ||| |||| ||| || |||||||||||||| || || |||||||||
Sbjct 5343375 TTCCCGCTGAGCGAGGAGGAGGCCGACTTCCCCATCGCCTACTCCATGGTCATCCACCAC 5343316
Query 13728 AAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGC 13787
|||||||||||||||||||| |||||| | || ||||||||||||||||| ||||||||
Sbjct 5343315 AAGATCGAGATGTTCGAGCGGCTCCTGCGCTCCCTCTACGCCCCGCAGAACGTCTACTGC 5343256
Query 13788 GTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGG 13847
|| ||||||||| |||| || || || ||| | || ||| ||||||||||
Sbjct 5343255 GTGCACGTGGACAGCAAGGCCCCCGCCGCCTTCCAGCAGGCCGTGCGGGCCATCGCCGCC 5343196
Query 13848 TGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGT 13907
|||||||| ||||| | ||||| ||| ||| | ||||||||||| |||||||
Sbjct 5343195 TGCTTCCCCAACGTCTTCGTGGCCAGCCGTCTGGAGAGCGTGGTGTACGCCTCCTGGTCC 5343136
Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGG 13967
|| ||||||||||||||| ||||||| ||||||| |||||| ||| |
Sbjct 5343135 CGGCTGCAGGCCGACCTCAACTGCATGCAGGACCTGCTGCGGAGCCCCGTGCCCTGGCGC 5343076
Query 13968 TACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGG 14027
||| | |||||| ||||| | |||||||| ||||||||||| ||||| || ||
Sbjct 5343075 TACGTCCTCAACACCTGCGGCACCGACTTCCCCATCAAGACCAACGCGGAGACGGTCCGC 5343016
Query 14028 GCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCA---ACCAC 14084
|||||| || ||| || ||||| | ||||| ||| | ||| | | ||
Sbjct 5343015 GCGCTGCGGGTGCTGCAGGGGCAGAACAGCATGGAGTCGGAG---AAGCCGACGGCCTAC 5342959
Query 14085 AAGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACC 14144
|||| | | ||| | | | | ||| |||| ||| | | | ||| |||
Sbjct 5342958 AAGCAGGAGCGCTGGAAGTACCGCCACCAAGTGG--AGCAG----TTCATCGTCCGCACG 5342905
Query 14145 GGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTT 14204
| || | | ||| | |||||||||||| | ||||| || |||| | ||| ||| |
Sbjct 5342904 GCCACGGAGAAGCCGCCGCCGCCGCTCCGCTCGCCCATGTTCACGGGCAGCGCCTACATC 5342845
Query 14205 GCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGC---TC 14261
||||| || |||| |||||| ||| || ||| || || | ||| | || ||
Sbjct 5342844 GCGGTGACGCGGGCCTTCGTGCGGCACGTGCT---GGAGGACCCCGAGGCGCAGCAGTTC 5342788
Query 14262 ATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGA 14321
| | ||| | ||||||| |||||||||||||||||| |||||||||| || | |
Sbjct 5342787 CTCGAGTGGGCCAAGGACACCTACAGCCCCGACGAGCACGTGTGGGCCACGCTGAACCGC 5342728
Query 14322 ATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGG 14381
| ||| |||||| | | ||| ||| ||||| | | | || ||||||
Sbjct 5342727 GCGCCCGGTGTGCCCGGCGCCGTGCCCCACAACGACAAGTTCCAGATGTCCGACATGAAC 5342668
Query 14382 GCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTG 14441
|| | | | | ||||||||||| ||| || ||||| | | || || |
Sbjct 5342667 GCGCTGCCCCGCCTGGTCAAGTGGCAGTACCTGGACGGGGACACGAGCCGCGGAGCGCCC 5342608
Query 14442 TACCCGCCTTGCGACGGCATCCACGTCCA-CGC--CATCTGCATCTTCGGGTCCGGCGAC 14498
|||||||| ||| ||| || | |||| ||| | ||||||||| |||| |||| |||
Sbjct 5342607 TACCCGCCCTGCACCGG---CCGCTTCCAGCGCAGCGTCTGCATCTACGGGGCCGGGGAC 5342551
Query 14499 GTGAAGTGGCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546
||| ||| || | | | ||||| || |||||||||||||||
Sbjct 5342550 GTGGCCTGGATGCTGCGGCAACACCACCTCTTGGCCAACAAGTTCGAC 5342503
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658545901216000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |