Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq5650 325 5e-84 >seq5650 Length=20435342 Score = 325 bits (360), Expect = 5e-84 Identities = 645/948 (68%), Gaps = 24/948 (3%) Strand=Plus/Minus Query 13608 GACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGTATCTCGTG 13667 || ||| ||||||||||| ||||||| |||| | | | || | || ||| Sbjct 5343435 GAGTACCTGAACATGACGAAGGACTGCGGCAGCTTCAAGGAGAGCCGGCGCTACATCGAC 5343376 Query 13668 AGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCAC 13727 || |||||| ||| |||| ||| || |||||||||||||| || || ||||||||| Sbjct 5343375 TTCCCGCTGAGCGAGGAGGAGGCCGACTTCCCCATCGCCTACTCCATGGTCATCCACCAC 5343316 Query 13728 AAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGC 13787 |||||||||||||||||||| |||||| | || ||||||||||||||||| |||||||| Sbjct 5343315 AAGATCGAGATGTTCGAGCGGCTCCTGCGCTCCCTCTACGCCCCGCAGAACGTCTACTGC 5343256 Query 13788 GTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGG 13847 || ||||||||| |||| || || || ||| | || ||| |||||||||| Sbjct 5343255 GTGCACGTGGACAGCAAGGCCCCCGCCGCCTTCCAGCAGGCCGTGCGGGCCATCGCCGCC 5343196 Query 13848 TGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGT 13907 |||||||| ||||| | ||||| ||| ||| | ||||||||||| ||||||| Sbjct 5343195 TGCTTCCCCAACGTCTTCGTGGCCAGCCGTCTGGAGAGCGTGGTGTACGCCTCCTGGTCC 5343136 Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGG 13967 || ||||||||||||||| ||||||| ||||||| |||||| ||| | Sbjct 5343135 CGGCTGCAGGCCGACCTCAACTGCATGCAGGACCTGCTGCGGAGCCCCGTGCCCTGGCGC 5343076 Query 13968 TACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGG 14027 ||| | |||||| ||||| | |||||||| ||||||||||| ||||| || || Sbjct 5343075 TACGTCCTCAACACCTGCGGCACCGACTTCCCCATCAAGACCAACGCGGAGACGGTCCGC 5343016 Query 14028 GCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCA---ACCAC 14084 |||||| || ||| || ||||| | ||||| ||| | ||| | | || Sbjct 5343015 GCGCTGCGGGTGCTGCAGGGGCAGAACAGCATGGAGTCGGAG---AAGCCGACGGCCTAC 5342959 Query 14085 AAGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACC 14144 |||| | | ||| | | | | ||| |||| ||| | | | ||| ||| Sbjct 5342958 AAGCAGGAGCGCTGGAAGTACCGCCACCAAGTGG--AGCAG----TTCATCGTCCGCACG 5342905 Query 14145 GGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTT 14204 | || | | ||| | |||||||||||| | ||||| || |||| | ||| ||| | Sbjct 5342904 GCCACGGAGAAGCCGCCGCCGCCGCTCCGCTCGCCCATGTTCACGGGCAGCGCCTACATC 5342845 Query 14205 GCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGC---TC 14261 ||||| || |||| |||||| ||| || ||| || || | ||| | || || Sbjct 5342844 GCGGTGACGCGGGCCTTCGTGCGGCACGTGCT---GGAGGACCCCGAGGCGCAGCAGTTC 5342788 Query 14262 ATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGA 14321 | | ||| | ||||||| |||||||||||||||||| |||||||||| || | | Sbjct 5342787 CTCGAGTGGGCCAAGGACACCTACAGCCCCGACGAGCACGTGTGGGCCACGCTGAACCGC 5342728 Query 14322 ATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGG 14381 | ||| |||||| | | ||| ||| ||||| | | | || |||||| Sbjct 5342727 GCGCCCGGTGTGCCCGGCGCCGTGCCCCACAACGACAAGTTCCAGATGTCCGACATGAAC 5342668 Query 14382 GCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTG 14441 || | | | | ||||||||||| ||| || ||||| | | || || | Sbjct 5342667 GCGCTGCCCCGCCTGGTCAAGTGGCAGTACCTGGACGGGGACACGAGCCGCGGAGCGCCC 5342608 Query 14442 TACCCGCCTTGCGACGGCATCCACGTCCA-CGC--CATCTGCATCTTCGGGTCCGGCGAC 14498 |||||||| ||| ||| || | |||| ||| | ||||||||| |||| |||| ||| Sbjct 5342607 TACCCGCCCTGCACCGG---CCGCTTCCAGCGCAGCGTCTGCATCTACGGGGCCGGGGAC 5342551 Query 14499 GTGAAGTGGCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 ||| ||| || | | | ||||| || ||||||||||||||| Sbjct 5342550 GTGGCCTGGATGCTGCGGCAACACCACCTCTTGGCCAACAAGTTCGAC 5342503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658545901216000