Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq1781 131 1e-25
seq2059 122 7e-23
seq7516 100 2e-16
>seq1781
Length=149560735
Score = 131 bits (144), Expect = 1e-25
Identities = 132/169 (78%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282
|||||| |||| |||||||| ||||||||||| ||||| || || || ||||||| |||
Sbjct 102234824 CATGTCTTTGTAATCTGCTCCAAAATGCCTCCATTGGAAACCATAAACTGGTCCCAAGTC 102234883
Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCT-CTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341
|||||||| ||| | | || ||||| ||| |||| || || | || || ||||| |
Sbjct 102234884 CCCCTCTTCTCTG-GTGCAAAACCCCTGCTTATCCAGGAACTCACGTGACCCATTGGCAT 102234942
Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390
|||| ||||| || ||||| ||||||||||||||| ||||| || ||
Sbjct 102234943 CCCAAATCTTCACACCCTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 102234991
Score = 107 bits (118), Expect = 2e-18
Identities = 122/164 (74%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001
||||| |||||||| || |||||||| ||||| || || |||||||||||||| || ||
Sbjct 102230706 AGCCCTGTGACGTGGGCAATCATGTATGTGAGCAGCGAATAGCTGGCGATGTTGAAAGGC 102230765
Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061
|| || || ||||| || || |||||||| || || || || || || || || |
Sbjct 102230766 ACTCCTAGTCCCATATCTCCAGACCTCTGATACAGTTGGCAAGACAGTTCACCATTTAGA 102230825
Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105
|| || ||||| || | || ||||| || || | |||||| ||
Sbjct 102230826 ACATAGAACTGGCAAAGAGCATGGCAAGGTGGCAAAGCCATCAG 102230869
>seq2059
Length=10123
Score = 122 bits (134), Expect = 7e-23
Identities = 132/170 (78%), Gaps = 4/170 (2%)
Strand=Plus/Minus
Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGG-AACCCGTACACCGGTCCCAGGT 30281
|||||| |||| |||||||| ||||||||||| ||| || || || || ||||||| ||
Sbjct 8725 CATGTCTTTGTAATCTGCTCCAAAATGCCTCCATTGGGAAACCATAAACTGGTCCCAAGT 8666
Query 30282 CTCCCTCTTCCCTGTGCTCGAAGCCCCT-CTTGTCCAAAAAGTCTCTGGAACCGTTGGCG 30340
| |||||||| ||| | | || ||||| ||| |||| || || | || || |||||
Sbjct 8665 C-CCCTCTTCTCTGGGTGCAAAACCCCTGCTTATCCAGGAACTCACGTGA-CCATTGGCA 8608
Query 30341 TCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390
||||| ||||| || ||||| ||||||||||||||| ||||| || ||
Sbjct 8607 TCCCAAATCTTCACACCCTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 8558
>seq7516
Length=82310166
Score = 100 bits (110), Expect = 2e-16
Identities = 87/108 (81%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460
|| |||||||||||||| |||| || || |||||| | ||||| | |||||| || ||
Sbjct 64054995 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAGAGGACGATTCTTCTCAGGA 64054936
Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508
||||||||||| || ||| ||||||||||||| | ||||| || |||
Sbjct 64054935 ATGGAGAACCAGGTTTTTTTACCCATTATCACTGCATTCTGTTTACCT 64054888
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406194153959700
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |