Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq1781 104 2e-17 >seq1781 Length=149560735 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||||| |||||||| |||||||| || || || || ||||| ||| Sbjct 68103449 GTGGTGGAGGAGCTCTTCCGTGATGGGGTCAACTGGGGCCGGATCGTCGCCTTCTTCGAG 68103508 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || || || || ||||| || || |||||||| | | || | | || || |||||| Sbjct 68103509 TTCGGCGGCGTGATGTGCGTCGAGAGCGTCAACCGGGAGATGTCGCCGCTGGTGGACAAC 68103568 Query 3365 ATTGCCGCGTGGATGACAGA 3384 |||||| | |||||||| || Sbjct 68103569 ATTGCCACCTGGATGACCGA 68103588 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 |||||||| | ||| |||||||||||||| | || |||||||| | || ||||| Sbjct 102230706 AGCCCTGTGACGTGGGCAATCATGTATGTGAGCAGCGAATAGCTGGCGATGTTGAAAGGC 102230765 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || || || ||||| ||| | || ||||| |||| ||||||||| || || || ||| | Sbjct 102230766 ACTCCTAGTCCCATATCTCCAGACCTCTGATACAGTTGGCAAGACAGTTCACCATTTAGA 102230825 Query 118654 ACATAAAACTG 118664 ||||| ||||| Sbjct 102230826 ACATAGAACTG 102230836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414358217539900