Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq6642 116 3e-21 >seq6642 Length=9979828 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||| | || || || || ||||| ||||| ||||| ||| Sbjct 6586405 ATGCAGATCTTCGTGAAAACCTTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 6586464 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || || || ||||||||||| | || || ||||| Sbjct 6586465 GACACAATTGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAG 6586524 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| ||||| || |||||||||| ||||| | || |||||| Sbjct 6586525 CAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 6586584 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 6586585 ATCCAGAAAGAGTCCAC 6586601 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| ||||| ||||| ||| Sbjct 6586633 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 6586692 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||||||||| | || || ||||| Sbjct 6586693 GACACCATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAAGAAGGCATTCCTCCTGATCA 6586751 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || |||||||||| ||||| | || ||||| Sbjct 6586752 GCAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAA 6586811 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 6586812 CATCCAGAAGGAGTCCAC 6586829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337912894925300