Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq1781 118 9e-22 seq7516 100 2e-16 seq2059 95.1 1e-14 >seq1781 Length=149560735 Score = 118 bits (130), Expect = 9e-22 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 ||||| |||||||| || |||||||| ||||| || || |||||||||||||| || ||| Sbjct 102230706 AGCCCTGTGACGTGGGCAATCATGTATGTGAGCAGCGAATAGCTGGCGATGTTGAAAGGC 102230765 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || ||||| || || |||||||| || || ||||| || || || || | Sbjct 102230766 ACTCCTAGTCCCATATCTCCAGACCTCTGATACAGTTGGCAAGACAGTTCACCATTTAGA 102230825 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || || ||||| || | |||||||| || || | ||||| ||| Sbjct 102230826 ACATAGAACTGGCAAAGAGCATGGCAAGGTGGCAAAGCCATCAGA 102230870 Score = 105 bits (116), Expect = 5e-18 Identities = 113/147 (77%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||||||||| ||||| || || || ||||||| ||| |||||||| ||| | | || Sbjct 102234846 AAATGCCTCCATTGGAAACCATAAACTGGTCCCAAGTCCCCCTCTTCTCTG-GTGCAAAA 102234904 Query 30077 CCCCT-CTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||||| ||| |||| || || | || || ||||| ||||| ||||| || ||||| | Sbjct 102234905 CCCCTGCTTATCCAGGAACTCACGTGACCCATTGGCATCCCAAATCTTCACACCCTTTGC 102234964 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCC 30162 ||||||||||||| ||||| || || Sbjct 102234965 AGAGAGCTCTTTGGCATTTGTAGAACC 102234991 >seq7516 Length=82310166 Score = 100 bits (110), Expect = 2e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || |||||||||||||| |||| || | |||||| | ||||| | |||||| || || Sbjct 64054995 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAGAGGACGATTCTTCTCAGGA 64054936 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || ||| ||||||||||||| | ||||| |||||| Sbjct 64054935 ATGGAGAACCAGGTTTTTTTACCCATTATCACTGCATTCTGTTTACCT 64054888 >seq2059 Length=10123 Score = 95.1 bits (104), Expect = 1e-14 Identities = 113/148 (76%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGG-AACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAA 30075 ||||||||||| ||| || || || || ||||||| ||| |||||||| ||| | | || Sbjct 8703 AAATGCCTCCATTGGGAAACCATAAACTGGTCCCAAGTC-CCCTCTTCTCTGGGTGCAAA 8645 Query 30076 GCCCCT-CTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCT 30134 ||||| ||| |||| || || | || || ||||| ||||| ||||| || ||||| Sbjct 8644 ACCCCTGCTTATCCAGGAACTCACGTGA-CCATTGGCATCCCAAATCTTCACACCCTTTG 8586 Query 30135 CGGAGAGCTCTTTGGAGTTTGTGGACCC 30162 | ||||||||||||| ||||| || || Sbjct 8585 CAGAGAGCTCTTTGGCATTTGTAGAACC 8558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406046996073850