Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq1781 118 9e-22
seq7516 100 2e-16
seq2059 95.1 1e-14
>seq1781
Length=149560735
Score = 118 bits (130), Expect = 9e-22
Identities = 125/165 (76%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773
||||| |||||||| || |||||||| ||||| || || |||||||||||||| || |||
Sbjct 102230706 AGCCCTGTGACGTGGGCAATCATGTATGTGAGCAGCGAATAGCTGGCGATGTTGAAAGGC 102230765
Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833
|| || || ||||| || || |||||||| || || ||||| || || || || |
Sbjct 102230766 ACTCCTAGTCCCATATCTCCAGACCTCTGATACAGTTGGCAAGACAGTTCACCATTTAGA 102230825
Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878
|| || ||||| || | |||||||| || || | ||||| |||
Sbjct 102230826 ACATAGAACTGGCAAAGAGCATGGCAAGGTGGCAAAGCCATCAGA 102230870
Score = 105 bits (116), Expect = 5e-18
Identities = 113/147 (77%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076
||||||||||| ||||| || || || ||||||| ||| |||||||| ||| | | ||
Sbjct 102234846 AAATGCCTCCATTGGAAACCATAAACTGGTCCCAAGTCCCCCTCTTCTCTG-GTGCAAAA 102234904
Query 30077 CCCCT-CTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135
||||| ||| |||| || || | || || ||||| ||||| ||||| || ||||| |
Sbjct 102234905 CCCCTGCTTATCCAGGAACTCACGTGACCCATTGGCATCCCAAATCTTCACACCCTTTGC 102234964
Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCC 30162
||||||||||||| ||||| || ||
Sbjct 102234965 AGAGAGCTCTTTGGCATTTGTAGAACC 102234991
>seq7516
Length=82310166
Score = 100 bits (110), Expect = 2e-16
Identities = 87/108 (81%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343
|| |||||||||||||| |||| || | |||||| | ||||| | |||||| || ||
Sbjct 64054995 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAGAGGACGATTCTTCTCAGGA 64054936
Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391
||||||||||| || ||| ||||||||||||| | ||||| ||||||
Sbjct 64054935 ATGGAGAACCAGGTTTTTTTACCCATTATCACTGCATTCTGTTTACCT 64054888
>seq2059
Length=10123
Score = 95.1 bits (104), Expect = 1e-14
Identities = 113/148 (76%), Gaps = 4/148 (3%)
Strand=Plus/Minus
Query 30017 AAATGCCTCCACTGG-AACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAA 30075
||||||||||| ||| || || || || ||||||| ||| |||||||| ||| | | ||
Sbjct 8703 AAATGCCTCCATTGGGAAACCATAAACTGGTCCCAAGTC-CCCTCTTCTCTGGGTGCAAA 8645
Query 30076 GCCCCT-CTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCT 30134
||||| ||| |||| || || | || || ||||| ||||| ||||| || |||||
Sbjct 8644 ACCCCTGCTTATCCAGGAACTCACGTGA-CCATTGGCATCCCAAATCTTCACACCCTTTG 8586
Query 30135 CGGAGAGCTCTTTGGAGTTTGTGGACCC 30162
| ||||||||||||| ||||| || ||
Sbjct 8585 CAGAGAGCTCTTTGGCATTTGTAGAACC 8558
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406046996073850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |