Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1781 131 1e-25 seq2059 122 6e-23 >seq1781 Length=149560735 Score = 131 bits (144), Expect = 1e-25 Identities = 132/169 (78%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 |||||| |||| |||||||| ||||||||||||||||| || || || ||||||| ||| Sbjct 102234824 CATGTCTTTGTAATCTGCTCCAAAATGCCTCCATTGGAAACCATAAACTGGTCCCAAGTC 102234883 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCT-CTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 |||||||| ||| | | || ||||| ||| |||| || || | || || ||||| | Sbjct 102234884 CCCCTCTTCTCTG-GTGCAAAACCCCTGCTTATCCAGGAACTCACGTGACCCATTGGCAT 102234942 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||| ||||| || ||||| | ||||||||||||| ||||| || || Sbjct 102234943 CCCAAATCTTCACACCCTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 102234991 Score = 111 bits (122), Expect = 1e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 ||||| |||||||| || |||||||| ||||| || || |||||||||||||| || || Sbjct 102230706 AGCCCTGTGACGTGGGCAATCATGTATGTGAGCAGCGAATAGCTGGCGATGTTGAAAGGC 102230765 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || ||||| || || |||||||| || || || || || || || |||| Sbjct 102230766 ACTCCTAGTCCCATATCTCCAGACCTCTGATACAGTTGGCAAGACAGTTCACCATTTAGA 102230825 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 || || ||||| || | || ||||| || || | |||||| || Sbjct 102230826 ACATAGAACTGGCAAAGAGCATGGCAAGGTGGCAAAGCCATCAG 102230869 >seq2059 Length=10123 Score = 122 bits (134), Expect = 6e-23 Identities = 132/170 (78%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGG-AACCCGTACACCGGTCCCAGGT 27547 |||||| |||| |||||||| ||||||||||||||| || || || || ||||||| || Sbjct 8725 CATGTCTTTGTAATCTGCTCCAAAATGCCTCCATTGGGAAACCATAAACTGGTCCCAAGT 8666 Query 27548 CTCCCTCTTCCCTGTGCTCGAAGCCCCT-CTTGTCCAAAAAGTCTCTGGAACCGTTGGCG 27606 | |||||||| ||| | | || ||||| ||| |||| || || | || || ||||| Sbjct 8665 C-CCCTCTTCTCTGGGTGCAAAACCCCTGCTTATCCAGGAACTCACGTGA-CCATTGGCA 8608 Query 27607 TCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 ||||| ||||| || ||||| | ||||||||||||| ||||| || || Sbjct 8607 TCCCAAATCTTCACACCCTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 8558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369401483412725