Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2929 102 1e-16 seq1 96.9 5e-15 seq1781 84.2 3e-11 >seq2929 Length=111302122 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| || || | || |||||||| ||||| || ||||||| || | ||| || Sbjct 96934802 TCATCTCTGCTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCTTC 96934743 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 |||||||| |||| || ||||| ||||||||||| || ||||| || || |||||||| Sbjct 96934742 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATGC 96934684 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| |||||||| | ||||||||||| || |||||||| || ||||| || |||||| Sbjct 96936068 GACATCACTCCCATCCTCTGATATTCACCTACTCGTTTCTCAAAGAAATTGGTCTTGCCT 96936009 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929 |||| || || || ||||| |||||||| ||||| Sbjct 96936008 TCCAGAGAGATGTTCTCCATGAAATCAAAAGGATT 96935974 Score = 91.5 bits (100), Expect = 2e-13 Identities = 78/95 (82%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| |||||||| | ||||||||||| || |||||||| || ||||| || |||||| Sbjct 96947392 GACATCACTCCCATCCTCTGATATTCACCTACTCGTTTCTC-AAGAAATTGGTCTTGCCT 96947334 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929 |||| || || || ||||| |||||||| ||||| Sbjct 96947333 TCCAGAGAGATGTTCTCCATGAAATCAAAAGGATT 96947299 >seq1 Length=196202544 Score = 96.9 bits (106), Expect = 5e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 || || ||||| || | ||||| || ||||| || || ||||| || || || | ||| Sbjct 194680086 TGGAACTCTCCTGAAAGGACTCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCAATGGAT 194680145 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 |||||||| |||| || |||||||| ||||||||||||||||| | | | | ||| Sbjct 194680146 TCATTGTTGCCCAGGATCTGAGCAGTGGAAGCAGTTGGCATAGGGGAAAGGAGAAGACTG 194680205 Query 77247 TTTCTGAGACCAT 77259 ||||||| ||||| Sbjct 194680206 TTTCTGACACCAT 194680218 Score = 95.1 bits (104), Expect = 2e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 78742 CACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAA 78801 |||| |||| ||| || ||||| ||||| || || || || || || ||||| || || | Sbjct 194691323 CACTGAATACTTTCTTAGTTTCTTTGTGCAGGTTGGACACTGCAATCCTTGCTGCCAGTA 194691382 Query 78802 TAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTA 78861 ||||||| ||||| || | || || || || ||| | || || || | |||| | Sbjct 194691383 TAGCATAGTCAGGGTGCTTGGTGGTCAGGGTTGCAGCTGTCTCAGCAGCCAGGGTATCCA 194691442 Query 78862 ACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGAT 78913 ||| | ||||||||||||| | || || || || || || ||||||| ||| Sbjct 194691443 GCTCCACAGTTGTGACCCCACTGTACAGCCCCTGGATCACCTTCATGGTGAT 194691494 >seq1781 Length=149560735 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || || || || | || ||||| || || | || || Sbjct 129690761 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 129690820 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||||||||| || || || || || |||||||| |||||||| || || ||||| || Sbjct 129690821 AGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGC 129690879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694464958124000