Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq2929 102 1e-16
seq1 96.9 5e-15
seq1781 84.2 3e-11
>seq2929
Length=111302122
Score = 102 bits (112), Expect = 1e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224
|||||||| || || | || |||||||| ||||| || ||||||| || | ||| ||
Sbjct 96934802 TCATCTCTGCTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCTTC 96934743
Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283
|||||||| |||| || ||||| ||||||||||| || ||||| || || ||||||||
Sbjct 96934742 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATGC 96934684
Score = 95.1 bits (104), Expect = 2e-14
Identities = 78/95 (82%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894
||||| |||||||| | ||||||||||| || |||||||| || ||||| || ||||||
Sbjct 96936068 GACATCACTCCCATCCTCTGATATTCACCTACTCGTTTCTCAAAGAAATTGGTCTTGCCT 96936009
Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929
|||| || || || ||||| |||||||| |||||
Sbjct 96936008 TCCAGAGAGATGTTCTCCATGAAATCAAAAGGATT 96935974
Score = 91.5 bits (100), Expect = 2e-13
Identities = 78/95 (82%), Gaps = 1/95 (1%)
Strand=Plus/Minus
Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894
||||| |||||||| | ||||||||||| || |||||||| || ||||| || ||||||
Sbjct 96947392 GACATCACTCCCATCCTCTGATATTCACCTACTCGTTTCTC-AAGAAATTGGTCTTGCCT 96947334
Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929
|||| || || || ||||| |||||||| |||||
Sbjct 96947333 TCCAGAGAGATGTTCTCCATGAAATCAAAAGGATT 96947299
>seq1
Length=196202544
Score = 96.9 bits (106), Expect = 5e-15
Identities = 101/133 (76%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
|| || ||||| || | ||||| || ||||| || || ||||| || || || | |||
Sbjct 194680086 TGGAACTCTCCTGAAAGGACTCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCAATGGAT 194680145
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
|||||||| |||| || |||||||| ||||||||||||||||| | | | | |||
Sbjct 194680146 TCATTGTTGCCCAGGATCTGAGCAGTGGAAGCAGTTGGCATAGGGGAAAGGAGAAGACTG 194680205
Query 77247 TTTCTGAGACCAT 77259
||||||| |||||
Sbjct 194680206 TTTCTGACACCAT 194680218
Score = 95.1 bits (104), Expect = 2e-14
Identities = 124/172 (72%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 78742 CACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAA 78801
|||| |||| ||| || ||||| ||||| || || || || || || ||||| || || |
Sbjct 194691323 CACTGAATACTTTCTTAGTTTCTTTGTGCAGGTTGGACACTGCAATCCTTGCTGCCAGTA 194691382
Query 78802 TAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTA 78861
||||||| ||||| || | || || || || ||| | || || || | |||| |
Sbjct 194691383 TAGCATAGTCAGGGTGCTTGGTGGTCAGGGTTGCAGCTGTCTCAGCAGCCAGGGTATCCA 194691442
Query 78862 ACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGAT 78913
||| | ||||||||||||| | || || || || || || ||||||| |||
Sbjct 194691443 GCTCCACAGTTGTGACCCCACTGTACAGCCCCTGGATCACCTTCATGGTGAT 194691494
>seq1781
Length=149560735
Score = 84.2 bits (92), Expect = 3e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224
|||||||| ||||| | ||| || || || || | || ||||| || || | || ||
Sbjct 129690761 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 129690820
Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283
||||||||||| || || || || || |||||||| |||||||| || || ||||| ||
Sbjct 129690821 AGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGC 129690879
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694464958124000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |