Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1781 102 1e-16 seq2929 96.9 5e-15 seq1 91.5 2e-13 >seq1781 Length=149560735 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || || || || | |||||||| || || | ||| || Sbjct 129690761 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 129690820 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||||||||| || || || || |||||||| |||||||| || || || || || Sbjct 129690821 AGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 129690880 Query 46774 ACAAGTCTCTCTCC 46787 || | |||||| || Sbjct 129690881 ACCACTCTCTCACC 129690894 >seq2929 Length=111302122 Score = 96.9 bits (106), Expect = 5e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382 |||||| |||||||| | || ||||||||||| |||||||| || ||||| || ||||| Sbjct 96936069 TGACATCACTCCCATCCTCTGATATTCACCTACTCGTTTCTCAAAGAAATTGGTCTTGCC 96936010 Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATT 46418 ||||| || || || ||||| |||||||| ||||| Sbjct 96936009 TTCCAGAGAGATGTTCTCCATGAAATCAAAAGGATT 96935974 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || || | || |||||||| ||||| |||||||||| || | || || Sbjct 96934802 TCATCTCTGCTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCTTC 96934743 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||| || | || ||||| ||||||||||| || ||||| || || || ||||| Sbjct 96934742 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATGCT 96934683 Query 46774 AC 46775 || Sbjct 96934682 AC 96934681 Score = 93.3 bits (102), Expect = 6e-14 Identities = 79/96 (82%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382 |||||| |||||||| | || ||||||||||| |||||||| || ||||| || ||||| Sbjct 96947393 TGACATCACTCCCATCCTCTGATATTCACCTACTCGTTTCTC-AAGAAATTGGTCTTGCC 96947335 Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATT 46418 ||||| || || || ||||| |||||||| ||||| Sbjct 96947334 TTCCAGAGAGATGTTCTCCATGAAATCAAAAGGATT 96947299 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 ||| |||| ||||| || || | |||||| |||||||||||||| |||||||| || || Sbjct 96933158 ATCCTTAATGTATGTGTCAATGAGAAGACTGTACATTTCTGAATGTATGTTTTCCATGGC 96933099 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 ||||| || || || ||||||| ||||| || | || || ||| Sbjct 96933098 AATCTGGAAGCCATAGAAACATCGCGCTTCCGTGACTTGCACTTCT 96933053 >seq1 Length=196202544 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || || ||||| || | ||||| || ||||| || || ||||| || || || | ||| Sbjct 194680086 TGGAACTCTCCTGAAAGGACTCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCAATGGAT 194680145 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 |||||||| |||| || |||||||| |||||||| |||||||| | | | | ||| Sbjct 194680146 TCATTGTTGCCCAGGATCTGAGCAGTGGAAGCAGTTGGCATAGGGGAAAGGAGAAGACTG 194680205 Query 75842 TTTCTGAGACCAT 75854 ||||||| ||||| Sbjct 194680206 TTTCTGACACCAT 194680218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712725198312000