Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq1781 102 1e-16
seq2929 96.9 5e-15
seq1 91.5 2e-13
>seq1781
Length=149560735
Score = 102 bits (112), Expect = 1e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
|||||||| ||||| | ||| || || || || | |||||||| || || | ||| ||
Sbjct 129690761 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 129690820
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
|||||||||||||| || || || || |||||||| |||||||| || || || || ||
Sbjct 129690821 AGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 129690880
Query 46774 ACAAGTCTCTCTCC 46787
|| | |||||| ||
Sbjct 129690881 ACCACTCTCTCACC 129690894
>seq2929
Length=111302122
Score = 96.9 bits (106), Expect = 5e-15
Identities = 79/96 (82%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382
|||||| |||||||| | || ||||||||||| |||||||| || ||||| || |||||
Sbjct 96936069 TGACATCACTCCCATCCTCTGATATTCACCTACTCGTTTCTCAAAGAAATTGGTCTTGCC 96936010
Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATT 46418
||||| || || || ||||| |||||||| |||||
Sbjct 96936009 TTCCAGAGAGATGTTCTCCATGAAATCAAAAGGATT 96935974
Score = 95.1 bits (104), Expect = 2e-14
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
|||||||| || || | || |||||||| ||||| |||||||||| || | || ||
Sbjct 96934802 TCATCTCTGCTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCTTC 96934743
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
|||||||| || | || ||||| ||||||||||| || ||||| || || || |||||
Sbjct 96934742 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATGCT 96934683
Query 46774 AC 46775
||
Sbjct 96934682 AC 96934681
Score = 93.3 bits (102), Expect = 6e-14
Identities = 79/96 (82%), Gaps = 1/96 (1%)
Strand=Plus/Minus
Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382
|||||| |||||||| | || ||||||||||| |||||||| || ||||| || |||||
Sbjct 96947393 TGACATCACTCCCATCCTCTGATATTCACCTACTCGTTTCTC-AAGAAATTGGTCTTGCC 96947335
Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATT 46418
||||| || || || ||||| |||||||| |||||
Sbjct 96947334 TTCCAGAGAGATGTTCTCCATGAAATCAAAAGGATT 96947299
Score = 84.2 bits (92), Expect = 3e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949
||| |||| ||||| || || | |||||| |||||||||||||| |||||||| || ||
Sbjct 96933158 ATCCTTAATGTATGTGTCAATGAGAAGACTGTACATTTCTGAATGTATGTTTTCCATGGC 96933099
Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995
||||| || || || ||||||| ||||| || | || || |||
Sbjct 96933098 AATCTGGAAGCCATAGAAACATCGCGCTTCCGTGACTTGCACTTCT 96933053
>seq1
Length=196202544
Score = 91.5 bits (100), Expect = 2e-13
Identities = 100/133 (75%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781
|| || ||||| || | ||||| || ||||| || || ||||| || || || | |||
Sbjct 194680086 TGGAACTCTCCTGAAAGGACTCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCAATGGAT 194680145
Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841
|||||||| |||| || |||||||| |||||||| |||||||| | | | | |||
Sbjct 194680146 TCATTGTTGCCCAGGATCTGAGCAGTGGAAGCAGTTGGCATAGGGGAAAGGAGAAGACTG 194680205
Query 75842 TTTCTGAGACCAT 75854
||||||| |||||
Sbjct 194680206 TTTCTGACACCAT 194680218
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712725198312000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |