Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq6387 125 2e-23
seq6642 105 2e-17
>seq6387
Length=12762846
Score = 125 bits (138), Expect = 2e-23
Identities = 166/227 (73%), Gaps = 4/227 (2%)
Strand=Plus/Minus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
|||||| | ||||||||||| ||||| ||||| || ||||||||||| |||| | ||
Sbjct 4540177 CCTGAGGCGCAGGACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 4540118
Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002
| ||| ||||| || || || |||||||| ||||||||||| || | | || ||
Sbjct 4540117 GCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCC 4540058
Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCA 152060
||||| || || || || |||||| |||| | | | | ||| || | || ||
Sbjct 4540057 CTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTATCACTGGGTTC-CACCTCCA 4539999
Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| || || || ||||| ||||| ||||||||||||| |||||| ||
Sbjct 4539998 AG-GTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATGTT 4539953
Score = 100 bits (110), Expect = 7e-16
Identities = 152/215 (71%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || ||||| || || ||||| || ||||||||||| |||| | ||| | |||||||
Sbjct 4540395 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCATCT 4540336
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || || ||||| ||||||||||| || | | || || ||||| ||
Sbjct 4540335 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCC 4540276
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || || || |||| | | |||| ||| ||| || || || || ||
Sbjct 4540275 TGGATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCGACCTCCAGGGTGATG 4540219
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| || | |||||||| |||| ||||||
Sbjct 4540218 GTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 4540184
>seq6642
Length=9979828
Score = 105 bits (116), Expect = 2e-17
Identities = 158/222 (71%), Gaps = 7/222 (3%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || ||||| || || ||||| || ||||||||||| || | | || | ||| |||
Sbjct 6586160 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 6586101
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || || ||||| | ||||||||| || | | || |||||||| |||
Sbjct 6586100 TCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCT 6586041
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || || ||| |||| | | |||| ||| ||| || || || || ||
Sbjct 6586040 TGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATG 6585984
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT-TTTACC 152110
|| ||||| || || |||||||| |||| |||||| ||||||
Sbjct 6585983 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTTACC 6585942
Score = 100 bits (110), Expect = 7e-16
Identities = 158/225 (70%), Gaps = 6/225 (3%)
Strand=Plus/Minus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
|||||| | || || ||||| || || ||||| || ||||||||||| || | | ||
Sbjct 6586854 CCTGAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 6586795
Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002
| ||| ||||| || || || || || || ||||||||||| || | | || ||
Sbjct 6586794 GCGCCCGTCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGAGGAATGCC 6586735
Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059
||| || || || || || || ||| |||| | | |||| ||| ||| || ||
Sbjct 6586734 TTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTC 6586678
Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || ||||| || || ||||||||||||| ||||||
Sbjct 6586677 GAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 6586633
Score = 91.5 bits (100), Expect = 3e-13
Identities = 150/215 (70%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || ||||| || || ||||| || ||||||||||| || | | || | |||||||
Sbjct 6586388 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 6586329
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || || ||||| | ||||||||| || | | || ||||| || ||
Sbjct 6586328 TCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATGCCTTCTTTATCC 6586269
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || || ||| |||| | | |||| ||| || || || || || ||
Sbjct 6586268 TGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGTTCAACCTCGAGGGTGATG 6586212
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| || || |||||||| |||| ||||||
Sbjct 6586211 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 6586177
Score = 87.8 bits (96), Expect = 4e-12
Identities = 149/215 (69%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || ||||| || || |||||||| ||||||||||| || | | || | ||| |||
Sbjct 6586616 AGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 6586557
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || || ||||| | ||||||||| || | | || ||||| || |||
Sbjct 6586556 TCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCT 6586497
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || || ||| | || | |||| ||| ||| || || || || ||
Sbjct 6586496 TGGATCTTGGCCTTCACATTTTCAATTGTGTC---ACTGGGCTCAACCTCGAGGGTGATG 6586440
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| || | || |||||||||| ||||||
Sbjct 6586439 GTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 6586405
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153473761351725
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |