Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq6387 125 2e-23 seq6642 105 2e-17 >seq6387 Length=12762846 Score = 125 bits (138), Expect = 2e-23 Identities = 166/227 (73%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||||||||||| ||||| ||||| || ||||||||||| |||| | || Sbjct 4540177 CCTGAGGCGCAGGACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 4540118 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||| ||||| || || || |||||||| ||||||||||| || | | || || Sbjct 4540117 GCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCC 4540058 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCA 152060 ||||| || || || || |||||| |||| | | | | ||| || | || || Sbjct 4540057 CTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTATCACTGGGTTC-CACCTCCA 4539999 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || ||||| ||||| ||||||||||||| |||||| || Sbjct 4539998 AG-GTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATGTT 4539953 Score = 100 bits (110), Expect = 7e-16 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| || || ||||| || ||||||||||| |||| | ||| | ||||||| Sbjct 4540395 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCATCT 4540336 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| ||||||||||| || | | || || ||||| || Sbjct 4540335 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCC 4540276 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || |||| | | |||| ||| ||| || || || || || Sbjct 4540275 TGGATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCGACCTCCAGGGTGATG 4540219 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || | |||||||| |||| |||||| Sbjct 4540218 GTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 4540184 >seq6642 Length=9979828 Score = 105 bits (116), Expect = 2e-17 Identities = 158/222 (71%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| || || ||||| || ||||||||||| || | | || | ||| ||| Sbjct 6586160 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 6586101 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| | ||||||||| || | | || |||||||| ||| Sbjct 6586100 TCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCT 6586041 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | | |||| ||| ||| || || || || || Sbjct 6586040 TGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATG 6585984 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT-TTTACC 152110 || ||||| || || |||||||| |||| |||||| |||||| Sbjct 6585983 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTTACC 6585942 Score = 100 bits (110), Expect = 7e-16 Identities = 158/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || ||||| || || ||||| || ||||||||||| || | | || Sbjct 6586854 CCTGAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 6586795 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||| ||||| || || || || || || ||||||||||| || | | || || Sbjct 6586794 GCGCCCGTCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGAGGAATGCC 6586735 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||| || || || || || || ||| |||| | | |||| ||| ||| || || Sbjct 6586734 TTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTC 6586678 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || || ||||||||||||| |||||| Sbjct 6586677 GAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 6586633 Score = 91.5 bits (100), Expect = 3e-13 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| || || ||||| || ||||||||||| || | | || | ||||||| Sbjct 6586388 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 6586329 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| | ||||||||| || | | || ||||| || || Sbjct 6586328 TCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATGCCTTCTTTATCC 6586269 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | | |||| ||| || || || || || || Sbjct 6586268 TGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGTTCAACCTCGAGGGTGATG 6586212 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 6586211 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 6586177 Score = 87.8 bits (96), Expect = 4e-12 Identities = 149/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| || || |||||||| ||||||||||| || | | || | ||| ||| Sbjct 6586616 AGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 6586557 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| | ||||||||| || | | || ||||| || ||| Sbjct 6586556 TCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCT 6586497 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| | || | |||| ||| ||| || || || || || Sbjct 6586496 TGGATCTTGGCCTTCACATTTTCAATTGTGTC---ACTGGGCTCAACCTCGAGGGTGATG 6586440 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || | || |||||||||| |||||| Sbjct 6586439 GTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 6586405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153473761351725