Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq6642 152 4e-32 seq6387 143 2e-29 >seq6642 Length=9979828 Score = 152 bits (168), Expect = 4e-32 Identities = 173/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||||||| | || |||||| || || ||| |||||| ||||||||||| || Sbjct 6586407 CATCCCACCTCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 6586348 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || |||| | || ||||||||||| || ||||||||||| | ||||||||| | Sbjct 6586347 AGACAGGGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGG 6586288 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | ||||| || ||| ||||| ||||| | | |||||||| || ||| Sbjct 6586287 AGGAATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTC 6586228 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| | || || ||||| || || ||||||||||| ||||| |||||| Sbjct 6586227 AACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 6586176 Score = 149 bits (164), Expect = 5e-31 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || |||||| || || ||| |||||| ||||||||||| || Sbjct 6586179 CATGCCTCCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 6586120 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || |||| |||| ||||||||||| || ||||||||||| | ||||||||| | Sbjct 6586119 AGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGG 6586060 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | |||||||| || ||||| ||||| | | |||||||| || || Sbjct 6586059 AGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTC 6586000 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| | || || ||||| || || ||||||||||| ||||| |||||| Sbjct 6585999 AACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 6585948 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || || || | || |||||| || || ||| |||||| ||||||||||| || | Sbjct 6586859 CCACCCCTGAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 6586800 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || |||| |||| ||||||||||| || ||||| |||| | ||||||||| | ||| Sbjct 6586799 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGAGGA 6586740 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | ||||| || ||| ||||| ||||| | | |||||||| || || ||| Sbjct 6586739 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 6586680 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || | || || ||||| || || ||||||||||||||||| |||||| Sbjct 6586679 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 6586632 Score = 132 bits (146), Expect = 3e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || |||||| || || ||| ||| || ||||||||||| || Sbjct 6586635 CATGCCTCCCCTCAGACGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTC 6586576 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || |||| |||| ||||||||||| || ||||||||||| | ||||||||| | Sbjct 6586575 AGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGG 6586516 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | ||||| || || ||||| ||||| || | || ||||| || || Sbjct 6586515 AGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCAATTGTGTCACTGGGCTC 6586456 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | || || ||||| || || | ||| ||||||||||| ||||| Sbjct 6586455 AACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 6586405 >seq6387 Length=12762846 Score = 143 bits (158), Expect = 2e-29 Identities = 173/233 (74%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || |||||| || || ||| |||||| ||||||||||| || Sbjct 4540414 CATCCCTCCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 4540355 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || |||| | || ||||||||||| || |||||||||| | ||||||||| | Sbjct 4540354 GGACAGAGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGG 4540295 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| ||||| |||| | |||| | |||||||| || | Sbjct 4540294 GGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTGTCACTGGGCT 4540236 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||||| || || ||||| || || | ||||||||| ||||| |||||| Sbjct 4540235 CGACCTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCATG 4540183 Score = 140 bits (154), Expect = 2e-28 Identities = 172/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || || || || || ||| |||||| ||||||||||| || Sbjct 4540186 CATGCCACCCCTGAGGCGCAGGACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 4540127 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || |||| |||| ||||||||||| || || ||||||| | ||||||||| | Sbjct 4540126 GGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGG 4540067 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||| ||| | | | ||||| || || ||| Sbjct 4540066 GGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTATCACTGGGTTC 4540007 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 |||||||| || || ||||| || |||||||||||||||||||| |||||| || Sbjct 4540006 CACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATGTTG 4539952 Score = 138 bits (152), Expect = 8e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || || || | || ||||||||| || ||| |||||| ||||||||||| || | Sbjct 4540638 CCACCCCTGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4540579 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| || |||||||||| | ||| ||||| | || Sbjct 4540578 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGATCGGGGGGA 4540519 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| ||||| ||||| |||| | ||||||||| || |||||| Sbjct 4540518 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC-GTTCTCAATGGTGTCGCTGGGTTCCAC 4540460 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || || ||||| || || | ||||||||| ||||| ||||| Sbjct 4540459 CTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 4540412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359887406184075