Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq6492 147 3e-30
seq5241 143 4e-29
>seq6492
Length=10956400
Score = 147 bits (162), Expect = 3e-30
Identities = 218/309 (71%), Gaps = 0/309 (0%)
Strand=Plus/Minus
Query 8277 CATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACT 8336
|||| || || ||||||| | |||||||| ||| |||||| || || || ||
Sbjct 9255207 CATCCGGCACATGGAACGCCACGTACGGACACTTCTTCACGTTGAGGCACACGAGTTTCT 9255148
Query 8337 GAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCC 8396
| | ||| ||||||||||| |||| || |||| || ||||| ||||||||||
Sbjct 9255147 CCAGGGATGCTGTCTTGACGATCTCGAAGCCGGTTGCTCCACCAAAGGTACTGGGCTTCC 9255088
Query 8397 AGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCA 8456
||||| | |||||||||||| |||| | | || || || || || || ||||| || |
Sbjct 9255087 AGTACTCTGGGGAGCAGATGGGGTTCCCAAGAAGTCCCTTCAGTGAAAATGGAGCGCCAA 9255028
Query 8457 ACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGG 8516
||| | ||||| || || |||||| ||||||| |||| || || | || ||||| |
Sbjct 9255027 TCTCCACCATGCTTTCCCCAAAGATGCCGTTGGGTTGGGGTTTCTCAAGCAGCAATCCTG 9254968
Query 8517 TGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCT 8576
|| | ||||| ||| |||| |||||| || || || || || || || | ||||
Sbjct 9254967 GATAAAACTCCAGAGCGTCGATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCTTGTCCT 9254908
Query 8577 TTTCTCCTG 8585
|||||||
Sbjct 9254907 CCTCTCCTG 9254899
>seq5241
Length=29963013
Score = 143 bits (158), Expect = 4e-29
Identities = 226/320 (71%), Gaps = 3/320 (1%)
Strand=Plus/Minus
Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348
|||| || | || ||||| || || || ||| | |||| || ||| | | ||
Sbjct 9908363 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 9908304
Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408
| |||| || | |||||||| | ||| || || ||||| |||||||||||| | ||||
Sbjct 9908303 TATTGATTATTTCAAACCCCACTTTTCCACCAAAAGTGCTTGGCTTCCAGTACTCAGGGG 9908244
Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468
|||| || || |||| || ||||| ||||||||||| || || | || | ||
Sbjct 9908243 AGCATATTGTATTTCCCATCAGTCCTTTCAGGGAGAACGGTGCGCCAATTTCTACCATTG 9908184
Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAGCTCC 8527
| ||||| |||||||| || | |||||||| || ||||| || | ||||| |||
Sbjct 9908183 TTTCACCAAAGATGGCACCTGGTCTTGGCTTTTCTAC-AAGAAGGCCTGGATACAGTTCC 9908125
Query 8528 ACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT- 8586
| ||| || | |||||| ||||| | ||||| ||||| || || |||||||||||
Sbjct 9908124 ATAGCATCTATGTCTCCATAAAGCTCTTCTAGTTCAGCAGCCATTTCTTTTTCTCCTGTA 9908065
Query 8587 TTTATTAATAAAAAATAACA 8606
|||||||| || || ||||
Sbjct 9908064 ATTATTAATGAATAAGAACA 9908045
Score = 140 bits (154), Expect = 5e-28
Identities = 176/242 (73%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303
||||||| || ||||| || || ||||| ||| ||| |||||||| || |||||||
Sbjct 9906344 ATGAGTCTTGTAGTCTGAAATAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAAG 9906285
Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363
|| || || || || |||||||| || ||||| || || || |||||||| || || ||
Sbjct 9906284 ACGTCACAGACTCTATTGTGTTCTCTCAGCCATATCGTTGCATACATCATTAGGCCTGGG 9906225
Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423
|||| |||||| |||| || || |||| | ||| | || || || | |||||
Sbjct 9906224 ACCAAGCCAAACACCTCCTGCCCAACAGAAAACTGCAGATGCTCAGGAACATGAGGAGGG 9906165
Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483
|||||||| | | || ||| || || | || ||||||||||| || |||||||||
Sbjct 9906164 TAGATCATCTCTGCTTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 9906105
Query 9484 TG 9485
||
Sbjct 9906104 TG 9906103
Score = 86.0 bits (94), Expect = 9e-12
Identities = 109/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 9910 ACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 9969
|||||| || || | || |||||||| || || || || || || | |||| |||
Sbjct 9904446 ACCTTTAACACCCATTGGTGTTGGACAGTCATGTCCTACTGGTGGAAGGCTTCTTGTGTA 9904387
Query 9970 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGGG 10029
|||||| |||||||| ||||||||||| | ||| |||||| |||||| | ||
Sbjct 9904386 ATAGGAAAGATTGGAATAAGCTTCCCAGGATTTGTAACTGTAGTCACTATTGTATGTTGG 9904327
Query 10030 AGGGCTGTCAATCAAATCGGATCTACCTGA 10059
|||||||||||||| | ||||| ||||
Sbjct 9904326 TGGGCTGTCAATCAAGTGTGATCTCGCTGA 9904297
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716666441464000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |