Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq6492 147 3e-30 seq5241 143 4e-29 >seq6492 Length=10956400 Score = 147 bits (162), Expect = 3e-30 Identities = 218/309 (71%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 8277 CATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACT 8336 |||| || || ||||||| | |||||||| ||| |||||| || || || || Sbjct 9255207 CATCCGGCACATGGAACGCCACGTACGGACACTTCTTCACGTTGAGGCACACGAGTTTCT 9255148 Query 8337 GAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCC 8396 | | ||| ||||||||||| |||| || |||| || ||||| |||||||||| Sbjct 9255147 CCAGGGATGCTGTCTTGACGATCTCGAAGCCGGTTGCTCCACCAAAGGTACTGGGCTTCC 9255088 Query 8397 AGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCA 8456 ||||| | |||||||||||| |||| | | || || || || || || ||||| || | Sbjct 9255087 AGTACTCTGGGGAGCAGATGGGGTTCCCAAGAAGTCCCTTCAGTGAAAATGGAGCGCCAA 9255028 Query 8457 ACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGG 8516 ||| | ||||| || || |||||| ||||||| |||| || || | || ||||| | Sbjct 9255027 TCTCCACCATGCTTTCCCCAAAGATGCCGTTGGGTTGGGGTTTCTCAAGCAGCAATCCTG 9254968 Query 8517 TGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCT 8576 || | ||||| ||| |||| |||||| || || || || || || || | |||| Sbjct 9254967 GATAAAACTCCAGAGCGTCGATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCTTGTCCT 9254908 Query 8577 TTTCTCCTG 8585 ||||||| Sbjct 9254907 CCTCTCCTG 9254899 >seq5241 Length=29963013 Score = 143 bits (158), Expect = 4e-29 Identities = 226/320 (71%), Gaps = 3/320 (1%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || || ||| | |||| || ||| | | || Sbjct 9908363 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 9908304 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | |||||||| | ||| || || ||||| |||||||||||| | |||| Sbjct 9908303 TATTGATTATTTCAAACCCCACTTTTCCACCAAAAGTGCTTGGCTTCCAGTACTCAGGGG 9908244 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||| || || |||| || ||||| ||||||||||| || || | || | || Sbjct 9908243 AGCATATTGTATTTCCCATCAGTCCTTTCAGGGAGAACGGTGCGCCAATTTCTACCATTG 9908184 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAGCTCC 8527 | ||||| |||||||| || | |||||||| || ||||| || | ||||| ||| Sbjct 9908183 TTTCACCAAAGATGGCACCTGGTCTTGGCTTTTCTAC-AAGAAGGCCTGGATACAGTTCC 9908125 Query 8528 ACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT- 8586 | ||| || | |||||| ||||| | ||||| ||||| || || ||||||||||| Sbjct 9908124 ATAGCATCTATGTCTCCATAAAGCTCTTCTAGTTCAGCAGCCATTTCTTTTTCTCCTGTA 9908065 Query 8587 TTTATTAATAAAAAATAACA 8606 |||||||| || || |||| Sbjct 9908064 ATTATTAATGAATAAGAACA 9908045 Score = 140 bits (154), Expect = 5e-28 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| || ||||| || || ||||| ||| ||| |||||||| || ||||||| Sbjct 9906344 ATGAGTCTTGTAGTCTGAAATAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAAG 9906285 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 || || || || || |||||||| || ||||| || || || |||||||| || || || Sbjct 9906284 ACGTCACAGACTCTATTGTGTTCTCTCAGCCATATCGTTGCATACATCATTAGGCCTGGG 9906225 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| |||||| |||| || || |||| | ||| | || || || | ||||| Sbjct 9906224 ACCAAGCCAAACACCTCCTGCCCAACAGAAAACTGCAGATGCTCAGGAACATGAGGAGGG 9906165 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | | || ||| || || | || ||||||||||| || ||||||||| Sbjct 9906164 TAGATCATCTCTGCTTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 9906105 Query 9484 TG 9485 || Sbjct 9906104 TG 9906103 Score = 86.0 bits (94), Expect = 9e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 9910 ACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 9969 |||||| || || | || |||||||| || || || || || || | |||| ||| Sbjct 9904446 ACCTTTAACACCCATTGGTGTTGGACAGTCATGTCCTACTGGTGGAAGGCTTCTTGTGTA 9904387 Query 9970 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGGG 10029 |||||| |||||||| ||||||||||| | ||| |||||| |||||| | || Sbjct 9904386 ATAGGAAAGATTGGAATAAGCTTCCCAGGATTTGTAACTGTAGTCACTATTGTATGTTGG 9904327 Query 10030 AGGGCTGTCAATCAAATCGGATCTACCTGA 10059 |||||||||||||| | ||||| |||| Sbjct 9904326 TGGGCTGTCAATCAAGTGTGATCTCGCTGA 9904297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716666441464000