Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq6387 136 1e-26
seq6642 131 4e-25
>seq6387
Length=12762846
Score = 136 bits (150), Expect = 1e-26
Identities = 161/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || ||||| || || || |||||| | ||||||||| | ||
Sbjct 4539959 CAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTGGAACCCAGTGAT 4540018
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||||||||| ||||| ||||| |||||||| || || || || || || |||||
Sbjct 4540019 ACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGATCAGCAG 4540078
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| || |||||||| || || ||||| ||||| || | || || |||| || ||| ||
Sbjct 4540079 AGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTACAACATC 4540138
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141
|| || || || || || |||||||| || | |||||
Sbjct 4540139 CAGAAGGAGTCCACTCTCCATCTTGTCCTGCGCCTCAG 4540176
>seq6642
Length=9979828
Score = 131 bits (144), Expect = 4e-25
Identities = 162/220 (74%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| || |||||||| || || || || || || |||||||||||||| | ||| || |
Sbjct 6586636 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGTG 6586693
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| ||||| || || ||||| |||||||||||||| || ||||| || ||||
Sbjct 6586694 ACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGATCAGC 6586753
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || || || || || || ||||| ||||| || | || || | || || |||
Sbjct 6586754 AGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAACA 6586813
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141
|||| || || || || |||||||| || || | |||||
Sbjct 6586814 TCCAGAAGGAGTCCACCCTGCATCTGGTGCTGCGCCTCAG 6586853
Score = 125 bits (138), Expect = 2e-23
Identities = 159/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || ||||| || || || || || || |||||||||||||| ||| | |||
Sbjct 6586180 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAACCCAGTGAC 6586239
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| ||||| || || ||||| ||||| |||||||| || ||||| || |||||
Sbjct 6586240 ACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGATCAGCAG 6586299
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| | ||||| || || || ||||| |||||||| | || || | || || ||| ||
Sbjct 6586300 AGGTTGATCTTTGCTGGTAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATC 6586359
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|| || || || || |||||||| || || | || |||
Sbjct 6586360 CAGAAGGAGTCCACCCTGCATCTGGTGCTGCGCCTGAGA 6586398
Score = 118 bits (130), Expect = 3e-21
Identities = 152/208 (73%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| || ||||||||||| | || || || || |||||||||||||| | ||| || |
Sbjct 6586408 CAGATCTTCGTGAAAACCTTGACTGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGTG 6586465
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|||| || || || || || ||||| || ||||||||||| || ||||| || ||||
Sbjct 6586466 ACACAATTGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAGC 6586525
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | ||||| || || || ||||| ||||| || | || || | || || |||
Sbjct 6586526 AGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAACA 6586585
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| ||||| || || |||||||| ||
Sbjct 6586586 TCCAGAAAGAGTCCACCCTGCATCTGGT 6586613
Score = 114 bits (126), Expect = 3e-20
Identities = 160/222 (72%), Gaps = 7/222 (3%)
Strand=Plus/Plus
Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969
|||| || |||| | || || ||||| || || || || || || |||||||||||||
Sbjct 6585941 AGGTAAACATGC---AGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGG 6585997
Query 177970 TGGAAAGCTCA--GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027
| | ||| || |||||||| ||||| || || ||||| || ||||| ||||| ||
Sbjct 6585998 TTG--AGCCCAGTGACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGCAT 6586055
Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087
||||| || ||||| | | ||||| || || || ||||| ||||| || | || ||
Sbjct 6586056 TCCTCCCGATCAGCAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCT 6586115
Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
| || || ||| |||| || || || || |||||||| ||
Sbjct 6586116 GTCTGACTACAACATCCAGAAGGAGTCCACCCTGCATCTGGT 6586157
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203369149629150
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |