Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq6387 136 1e-26 seq6642 131 4e-25 >seq6387 Length=12762846 Score = 136 bits (150), Expect = 1e-26 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || || || |||||| | ||||||||| | || Sbjct 4539959 CAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTGGAACCCAGTGAT 4540018 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||| |||||||| || || || || || || ||||| Sbjct 4540019 ACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGATCAGCAG 4540078 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || |||||||| || || ||||| ||||| || | || || |||| || ||| || Sbjct 4540079 AGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTACAACATC 4540138 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 || || || || || || |||||||| || | ||||| Sbjct 4540139 CAGAAGGAGTCCACTCTCCATCTTGTCCTGCGCCTCAG 4540176 >seq6642 Length=9979828 Score = 131 bits (144), Expect = 4e-25 Identities = 162/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || |||||||| || || || || || || |||||||||||||| | ||| || | Sbjct 6586636 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGTG 6586693 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| |||||||||||||| || ||||| || |||| Sbjct 6586694 ACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGATCAGC 6586753 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || || || || || ||||| ||||| || | || || | || || ||| Sbjct 6586754 AGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAACA 6586813 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || || || |||||||| || || | ||||| Sbjct 6586814 TCCAGAAGGAGTCCACCCTGCATCTGGTGCTGCGCCTCAG 6586853 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || |||||||||||||| ||| | ||| Sbjct 6586180 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAACCCAGTGAC 6586239 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||||| ||||| |||||||| || ||||| || ||||| Sbjct 6586240 ACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGATCAGCAG 6586299 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| || || || ||||| |||||||| | || || | || || ||| || Sbjct 6586300 AGGTTGATCTTTGCTGGTAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATC 6586359 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || |||||||| || || | || ||| Sbjct 6586360 CAGAAGGAGTCCACCCTGCATCTGGTGCTGCGCCTGAGA 6586398 Score = 118 bits (130), Expect = 3e-21 Identities = 152/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || ||||||||||| | || || || || |||||||||||||| | ||| || | Sbjct 6586408 CAGATCTTCGTGAAAACCTTGACTGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGTG 6586465 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || || || || || ||||| || ||||||||||| || ||||| || |||| Sbjct 6586466 ACACAATTGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAGC 6586525 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| || || || ||||| ||||| || | || || | || || ||| Sbjct 6586526 AGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAACA 6586585 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || |||||||| || Sbjct 6586586 TCCAGAAAGAGTCCACCCTGCATCTGGT 6586613 Score = 114 bits (126), Expect = 3e-20 Identities = 160/222 (72%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| || |||| | || || ||||| || || || || || || ||||||||||||| Sbjct 6585941 AGGTAAACATGC---AGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGG 6585997 Query 177970 TGGAAAGCTCA--GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 | | ||| || |||||||| ||||| || || ||||| || ||||| ||||| || Sbjct 6585998 TTG--AGCCCAGTGACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGCAT 6586055 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||||| || ||||| | | ||||| || || || ||||| ||||| || | || || Sbjct 6586056 TCCTCCCGATCAGCAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCT 6586115 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || ||| |||| || || || || |||||||| || Sbjct 6586116 GTCTGACTACAACATCCAGAAGGAGTCCACCCTGCATCTGGT 6586157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203369149629150