Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq6387 143 2e-29
seq6642 138 1e-27
>seq6387
Length=12762846
Score = 143 bits (158), Expect = 2e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|| ||||| || ||| ||||||||| ||||| |||||||| ||||||||| |||| ||
Sbjct 4540164 ACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCC 4540105
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||||||||| ||||| ||||| | ||| || || | ||||| || |||||||||| |
Sbjct 4540104 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGG 4540045
Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833
|| || ||| | | | || || || | |||||||||| || || || ||
Sbjct 4540044 ATCTTGGCCTTGACATTCTCGATGGTATCACTGGGTTCCACCTCCAAGGTGATGGTCTTG 4539985
Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| || || ||||| ||||| |||||||||||
Sbjct 4539984 CCAGTGAGGGTCTTCACGAAGATCTGCATGTT 4539953
Score = 143 bits (158), Expect = 2e-29
Identities = 163/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
|| || | |||||||||||| ||| ||||||||| ||||| |||||||| || ||||||
Sbjct 4540401 AGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGC 4540342
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||| || || ||||| | ||| || || | ||||| || ||||
Sbjct 4540341 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCC 4540282
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
|||||| ||| || ||||| | | ||||| || | ||| ||||||| ||
Sbjct 4540281 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTG 4540222
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| || || || |||| ||||| || || |||||||||
Sbjct 4540221 ATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCATG 4540183
Score = 141 bits (156), Expect = 9e-29
Identities = 162/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
|| || | |||||| ||||| ||| ||||||||| ||||| ||||| || ||||||||
Sbjct 4540629 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGT 4540570
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||| || || ||||| | |||||| || | ||||| || ||||
Sbjct 4540569 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGATCGGGGGGAATGCCCTCC 4540510
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
|||||| ||| || ||||| | | |||||||| | |||||||||| ||
Sbjct 4540509 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTG 4540450
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || || |||| ||||| || || ||||||||
Sbjct 4540449 ATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 4540412
>seq6642
Length=9979828
Score = 138 bits (152), Expect = 1e-27
Identities = 162/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
|| || | |||||||||||| ||| ||||||||| ||||| ||||| || |||||||||
Sbjct 6586850 AGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 6586791
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
|||| || ||||||||||| || || ||||| | ||| || || | |||| || ||
Sbjct 6586790 CCGTCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGAGGAATGCCTTCT 6586731
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
|||||| ||| || ||||| | | ||||| || | ||| ||||| | ||
Sbjct 6586730 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTG 6586671
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| || || || ||||| ||||| ||||| |||||||||
Sbjct 6586670 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 6586632
Score = 132 bits (146), Expect = 4e-26
Identities = 162/221 (73%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
|| || | |||||||||||| ||| ||||||||| ||||| ||||| || |||||||||
Sbjct 6586166 AGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 6586107
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
|||| || ||||||||||| || || |||| | ||| || || | |||| || |||
Sbjct 6586106 CCGTCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCC 6586047
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
||||| ||| || ||||| | | ||||| || | ||| ||||| | ||
Sbjct 6586046 TTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTG 6585987
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| || || || ||||| ||||| || || |||||||||||
Sbjct 6585986 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 6585946
Score = 114 bits (126), Expect = 1e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | |||||||||||| ||| ||| ||||| ||||| ||||| || |||||||||
Sbjct 6586622 AGACGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGC 6586563
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
|||| || ||||||||||| || || |||| | ||| || || | |||| || ||
Sbjct 6586562 CCGTCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCT 6586503
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
||||| ||| || ||||| | ||||| || | ||| ||||| | ||
Sbjct 6586502 TTGTCTTGGATCTTGGCCTTCACATTTTCAATTGTGTCACTGGGCTCAACCTCGAGGGTG 6586443
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || || |||| || || ||||| ||||||||
Sbjct 6586442 ATGGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 6586405
Score = 111 bits (122), Expect = 1e-19
Identities = 156/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
|| || | |||||||||||| ||| ||||||||| ||||| ||||| || |||||||||
Sbjct 6586394 AGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 6586335
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || |||||||| || || || |||| | ||| || || | |||| || ||
Sbjct 6586334 CCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATGCCTTCT 6586275
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
|| ||| ||| || ||||| | | ||||| || | || ||||| | ||
Sbjct 6586274 TTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCAACCTCGAGGGTG 6586215
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| || || || ||||| ||||| || || |||||||||
Sbjct 6586214 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 6586176
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462168342670000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |