Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13] 61,831 sequences; 1,129,694,867 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq44559 95.1 8e-15 >seq44559 Length=13795 Score = 95.1 bits (104), Expect = 8e-15 Identities = 110/148 (74%), Gaps = 8/148 (5%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 ||||| |||||||| |||||||| ||||| |||||||| ||||| | || || || ||| Sbjct 11862 TATTCGGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCT 11921 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCTA----GATCCATTTGCATCCCAAAT 97517 || | |||||| ||||||| | ||| || |||||||| ||||||||||| Sbjct 11922 CTGGTGCTGAAACCCTGCTTATCCA----GGAACTCACGTGATCCATTAGCATCCCAAAT 11977 Query 97518 GTGCACACCAGATGCTGCAAGCTCTTTG 97545 | |||||| ||| | ||||||||| Sbjct 11978 CTTCACACCCTTTGCAGAGAGCTCTTTG 12005 Score = 87.8 bits (96), Expect = 1e-12 Identities = 132/185 (71%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 ||||||||||| ||||| | || | || |||||||| ||||| || |||||||| ||| Sbjct 8553 GTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCACTCCT 8612 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 ||||||||||| | || || ||||| | || || || | | |||| ||||| Sbjct 8613 AGTCCCATATCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGGACATAG 8672 Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAA 97296 ||||| | | |||| || || ||||| ||||| | || ||||| || ||| | | Sbjct 8673 AACTGGCAAAGGGCATGGCATGGAGGCAAAGCCATCAGAGAAATATCTAGGA-ATTGC-A 8730 Query 97297 GCACA 97301 ||||| Sbjct 8731 GCACA 8735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346522675606670