Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13]
61,831 sequences; 1,129,694,867 total letters
Query= NC_002188.1
Length=288539
Score E
Sequences producing significant alignments: (Bits) Value
seq38230 111 3e-19
>seq38230
Length=46016
Score = 111 bits (122), Expect = 3e-19
Identities = 106/133 (80%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116
|| ||||||||||||||| | ||| | ||||| |||||||||||||||| ||||||||
Sbjct 29316 GCTTTTTTTGGAGCTCAGATGAATGCATTTATTCATGTTATTATGTACATGTATTATGGA 29375
Query 52117 ATGGCCGCTTGTGGTCCT-ATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175
| || || ||||| ||| | |||||||| || || ||||||||||| || | || ||
Sbjct 29376 TTAGCTGCCTGTGGCCCTAAATTTCAGAAA-TACCTGTGGTGGAAACGATACTTGACCAT 29434
Query 52176 AATGCAGTTGGTA 52188
| |||| ||||||
Sbjct 29435 ATTGCAATTGGTA 29447
Score = 100 bits (110), Expect = 5e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244
||| ||||||||| | |||| || || || || |||| ||||| || ||||| || ||
Sbjct 29953 GGTGCAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTT 30012
Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304
|| |||||||| || ||| || ||| ||||| || | | ||||| || ||||||||
Sbjct 30013 CCCTAAATGGATGCACTGGAGTGTAATTTTCTATGCTGTCACCTTCATTTTCCTGTTTGG 30072
Query 52305 TAACTTCTATTTTAGAACATACAAG 52329
||||||||| | | | ||||| |||
Sbjct 30073 TAACTTCTACTATCGGACATATAAG 30097
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 922483272733240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |