Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13]
61,831 sequences; 1,129,694,867 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq8137 102 8e-17
seq32411 87.8 2e-12
>seq8137
Length=98436
Score = 102 bits (112), Expect = 8e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318
|| || || || || | || || || || || || || ||||| || || | || ||
Sbjct 11191 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 11132
Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378
| |||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| |||
Sbjct 11131 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 11072
Query 16379 ACCAATCGCTCACC 16392
|||| || ||||||
Sbjct 11071 ACCACTCTCTCACC 11058
Score = 102 bits (112), Expect = 8e-17
Identities = 106/139 (76%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 15890 AAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTTGA 15949
||||| ||| |||| || ||||| || || | | || |||||| | | ||||
Sbjct 16349 AAATCTGCATCCAGAGTGAAGACATTGTCCATTGTTTCTGCCATAACAGCAAAACGTTGA 16290
Query 15950 TATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATA 16009
||||| ||| | ||| ||||||||||||||||||||||| | |||||||| |||||
Sbjct 16289 TATTCCGAAACCCGCTTCTCAAAGAAATTTGTTTTTCCTTCCAGAGAAATATTCTCCATG 16230
Query 16010 AAATCAAAAGGATTTTTTG 16028
|||||||||||||||| ||
Sbjct 16229 AAATCAAAAGGATTTTCTG 16211
>seq32411
Length=23632
Score = 87.8 bits (96), Expect = 2e-12
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 15926 TTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTT 15985
|||||||| ||| ||| | |||||||||| |||| ||| ||||||||||| || ||
Sbjct 19016 TTTGACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTG 19075
Query 15986 CCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATT 16023
||||| | || || |||||||| || |||||||||||
Sbjct 19076 CCTTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 19113
Score = 87.8 bits (96), Expect = 2e-12
Identities = 94/123 (76%), Gaps = 1/123 (1%)
Strand=Plus/Plus
Query 16490 TCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTC 16549
||||| |||| ||| || || || || || | ||| |||||||||||||| |||||
Sbjct 22819 TCTTTAGAATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTT 22878
Query 16550 TCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AGAGTA 16608
||||| || ||||| || ||||| || || | |||||| | ||||||||||| || ||
Sbjct 22879 TCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTCTTGACTA 22938
Query 16609 AAA 16611
|||
Sbjct 22939 AAA 22941
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462154530256600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |