Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13] 61,831 sequences; 1,129,694,867 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq53944 113 3e-20 seq8994 111 1e-19 >seq53944 Length=218 Score = 113 bits (124), Expect = 3e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 107937 GACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAAT 107996 ||||| ||||| ||| | ||| || | |||||| | |||| ||| | ||| | || || Sbjct 218 GACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCCATGCCGTGGCACTACGTCCTCAAC 159 Query 107997 ACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATG 108056 || || || || ||||||||||| |||||||| || ||||| |||| ||||| |||||| Sbjct 158 ACCTGTGGCACCGACTTCCCCATCAAGACCAACGCTGAGATCGTCCGTGCCCTGAAGATG 99 Query 108057 TTGAAGGGTAAGAACAGTATGGAGTCTGAG 108086 || |||| |||||| |||||||| ||| Sbjct 98 CTGCAGGGGCGGAACAGCATGGAGTCAGAG 69 >seq8994 Length=37908 Score = 111 bits (122), Expect = 1e-19 Identities = 202/290 (70%), Gaps = 12/290 (4%) Strand=Plus/Minus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| |||||||| |||||||| || || |||| |||||||| ||||| | Sbjct 26698 TTGAGTGGGCAAAAGACACTTATAGCCCAGATGAGTACCTGTGGGCCACAATTCAGAGAA 26639 Query 108334 CTCCGTGGATGCCTGGCT-CTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATG 108389 ||| || | || || | | ||| || || || |||||| || | || |||||| Sbjct 26638 -TCCCTGAAGTCCCGGGTGCAGTTTCTTCTAGTGAC---AAGTATGACGTTTCTGACATG 26583 Query 108390 ACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGA--GGGAGATGTCAGCATGGGGG 108447 | ||| | |||||| | ||||||||||||||| || | || ||||| || || | Sbjct 26582 AATGCACTGGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGACATGTC--CAAAGGTG 26525 Query 108448 CGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGG 108507 | || || |||| ||| |||| | ||| | | | || ||| |||| || | Sbjct 26524 CACCCTACCCACCATGCAGTGGAGTTCATGTTCGCTCTGTGTGTGTTTTTGGGGTGGGAG 26465 Query 108508 ACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||||| ||||||| || | |||||| ||| |||| || || ||||||||| Sbjct 26464 ACCTGAACTGGATGCTACGGAACCACCACTTCTTTGCTAATAAGTTTGAC 26415 Score = 82.4 bits (90), Expect = 5e-11 Identities = 226/343 (66%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || || || ||||| ||| || || ||||| ||||| || ||||| || | || Sbjct 27287 CCTCTCAGCAATGAAGAAGCAGAATTTCCAATTGCTTACTCAATAGTGGTTTATCACAAA 27228 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | |||| | || || || | | |||||||||||||| | ||||| | Sbjct 27227 ATTGAGATGCTTGATAGACTTCTAAGATCAATCTATGCCCCTCAGAATTTTTACTGCATT 27168 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || || ||||| ||||| |||| | || || |||| || | || || Sbjct 27167 CATGTTGACAAAAAGTCTCCAGAATCTTTTTTTGCTGCTGTGAAGGGAATAGTCTCATGT 27108 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || || ||||| || |||| |||||| || || ||||| || ||| ||| Sbjct 27107 TTTGATAACGTCTTTATTTCCAGCCAGTTGGAGAGTGTTGTATATGCTTCATGGAGCAGG 27048 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 ||||| || ||| | ||||| ||| ||| | || |||| ||| | | ||||| | Sbjct 27047 GTGCAGGCAGACATTAACTGCATGACAGA-TCTCTACAGA-AGAAGTTCAAACTGGAAAT 26990 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 || || | || || || | ||||| || ||||||||||| Sbjct 26989 ACCTAATAAACCTCTGTGGCATGGACTTTCCTATAAAGACCAA 26947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348006356712894