Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13] 61,831 sequences; 1,129,694,867 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq34904 116 3e-21 seq49351 102 7e-17 >seq34904 Length=29476 Score = 116 bits (128), Expect = 3e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| |||||||| || ||||| ||||| |||||||| || || || || Sbjct 10513 ACCTCCTCTTTGCTGGTGTACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTC 10454 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 ||||| || ||| ||||| || || ||||| || || ||||| ||||||||||| ||| Sbjct 10453 CCCAAGTTCTGCTGATTGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTG 10394 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| || || ||||| || Sbjct 10393 CCGGTCTCTGTCTGAGATTCAATGATAGC 10365 >seq49351 Length=2879 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || |||||| | || ||||| || Sbjct 150 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 209 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||||||||| ||| | || || || ||| Sbjct 210 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAG 269 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||||||||| ||| ||||||| || || ||| || ||| Sbjct 270 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 329 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || ||||| || || || |||| || | |||||||| |||| Sbjct 330 ATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGCCTGAGGGGTGGTA 378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445421872721520