Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13] 61,831 sequences; 1,129,694,867 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq8137 123 3e-23 seq32411 105 8e-18 seq34904 82.4 1e-10 >seq8137 Length=98436 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || || || || ||||| ||||| ||||| | ||| | Sbjct 11193 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 11134 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||||||||| | ||| || || || ||||||||||| ||||| ||||||||||||| Sbjct 11133 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 11074 Query 33724 CAATAAGTCTCTCTCC 33739 ||| | |||||| || Sbjct 11073 CAACCACTCTCTCACC 11058 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 33969 TTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 34028 |||||||| || ||||||||||||||||||||||| |||| ||||| ||||| ||| Sbjct 6423 TTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAACATGAGAGATAAAGTAT 6364 Query 34029 TTTTCGTCTGGTGTTAGTTTATTCCA 34054 ||||| |||| | | || || ||||| Sbjct 6363 TTTTCATCTGCTTTCAGCTTGTTCCA 6338 >seq32411 Length=23632 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||||||| || | ||| |||||||| |||||||| ||||||| || | || | Sbjct 20696 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 20755 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||||| || || || || || || ||||||||||| ||||| ||||| ||||| | Sbjct 20756 TCAGCCAAAAAATTGATGCAAAAGAGCCTGAAAAGAAGATCCCTTCCACTGCTGCAAAAG 20815 Query 33724 C 33724 | Sbjct 20816 C 20816 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 ||||| |||||||| | || |||||||| || || || || || ||||| || || ||| Sbjct 19019 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 19078 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33370 |||| || || ||||||||||| ||||| ||||| Sbjct 19079 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 19113 >seq34904 Length=29476 Score = 82.4 bits (90), Expect = 1e-10 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326 ||||| ||||| || |||||||||||||| || || | || || ||||| | || || Sbjct 9107 ACTCGCTTCATGAAAAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 9048 Query 63327 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385 || || || || || ||||| |||||| || || ||| | | || || ||||||| || Sbjct 9047 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 8989 Query 63386 TTCCAAGTATATGGCCATAACTCCAGG 63412 |||| ||| ||||| | | | ||||| Sbjct 8988 CTCCAGGTAGATGGCAAAAGCCCCAGG 8962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629330821849680