Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13] 61,831 sequences; 1,129,694,867 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq8137 120 4e-22 seq22335 111 2e-19 >seq8137 Length=98436 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 11193 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 11134 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 11133 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 11074 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 11073 CAACCACTCTCTCACC 11058 >seq22335 Length=7958 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 9228 TATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCC 9287 ||||| |||||| || | |||| | | | ||| || ||||||||||||||||| ||| Sbjct 764 TATTTTTTATTAAATGCCTCCAGTAAACGCAGCAGGTGTAAGAACAGATTGATGATGTCC 823 Query 9288 AAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAG 9347 ||||||| |||||| | || | | || |||||||| || | || || || || | Sbjct 824 AAGTAGAGATTGATTGCAGCCAGTATGTACTCTTCAGGGGATAATTTGTGCATCAGCAAA 883 Query 9348 TGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGC 9407 || |||||||| ||||| ||||| ||||| | ||| || || ||||| | |||| | Sbjct 884 TGAGTGTCATAAATAATAAATCCACAGAACAGAAGAGCTCCGGCAGCAGCAAACACCAAC 943 Query 9408 TCCACTGTTTCACT 9421 || | ||| ||||| Sbjct 944 TCTATTGTCTCACT 957 Score = 104 bits (114), Expect = 3e-17 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 9456 AAAATCCACAAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGT 9515 |||||| ||| | |||| | |||||||||| ||| ||||| ||||||||||| || Sbjct 2095 AAAATCACCAATATGACAACATACCCTGCTCCAAATTTGCTGAAGTCTCTCTTTGACTGC 2154 Query 9516 AGAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCA 9570 | |||||||||||||| ||||||| ||||||||||| || || || ||||||| Sbjct 2155 AAGGTATATGCAGTCAGTCCAAGAAATACTGCAGTAGTAAGAATAAAGGCTTGCA 2209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657664106470040