Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13] 61,831 sequences; 1,129,694,867 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq8137 132 6e-26 seq32411 111 2e-19 seq34904 87.8 2e-12 >seq8137 Length=98436 Score = 132 bits (146), Expect = 6e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 11193 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 11134 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||||| ||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 11133 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 11074 Query 42207 CAATAAGTCTCTCTCC 42222 ||| | |||||| || Sbjct 11073 CAACCACTCTCTCACC 11058 >seq32411 Length=23632 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||||| || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 20696 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 20755 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||||| || || ||||| || || ||||||||||| ||||| ||||| ||||| | Sbjct 20756 TCAGCCAAAAAATTGATGCAAAAGAGCCTGAAAAGAAGATCCCTTCCACTGCTGCAAAAG 20815 Query 42207 C 42207 | Sbjct 20816 C 20816 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/132 (76%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 42317 TCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTT 42376 || ||| |||||||| || || || || | |||||| |||||||||||||| || ||| Sbjct 22819 TCTTTAGAATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTT 22878 Query 42377 TCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTAC-A 42435 || ||||| ||||| || || |||||||| | || || || | ||||||||| || | Sbjct 22879 TCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTCTTGACTA 22938 Query 42436 AAATCGTTCAGC 42447 |||| ||||| Sbjct 22939 AAATAAATCAGC 22950 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||| |||||||| | || |||||||| || || || || || ||||| ||||| ||| Sbjct 19019 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 19078 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATT 41853 |||| || || ||||||||||| ||||| ||||| Sbjct 19079 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 19113 >seq34904 Length=29476 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||| ||||| || |||||||||||||| || || | || || ||||||| || ||| Sbjct 9107 ACTCGCTTCATGAAAAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 9048 Query 72082 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140 || || || || || ||||| |||||| || || ||| | | || || ||||||| || Sbjct 9047 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 8989 Query 72141 TTCCAAGTATATGGC 72155 |||| ||| ||||| Sbjct 8988 CTCCAGGTAGATGGC 8974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670620484901560