Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13]
61,831 sequences; 1,129,694,867 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq38230 168 2e-36
seq8137 113 1e-19
seq32411 107 4e-18
seq40145 84.2 5e-11
>seq38230
Length=46016
Score = 168 bits (186), Expect = 2e-36
Identities = 135/163 (83%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547
|| ||||||||||||||| ||||||||||||| ||||| | ||||| | |||||||||
Sbjct 26992 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 27051
Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607
|| | ||||||||||| ||||||||||| || ||||| ||||| ||||| || |||||
Sbjct 27052 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 27111
Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650
|| ||| | ||||| |||||||| ||| | ||||| |||||||
Sbjct 27112 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 27154
Score = 87.8 bits (96), Expect = 4e-12
Identities = 101/135 (75%), Gaps = 1/135 (1%)
Strand=Plus/Plus
Query 78644 GGACAAGCGTTTCTAGGAGCTGAAATAAATTCATTCGTACACGTTATTATGTATACTTAT 78703
||||| || ||| | |||||| | || ||| |||| | || ||||||||||| | |||
Sbjct 29311 GGACA-GCTTTTTTTGGAGCTCAGATGAATGCATTTATTCATGTTATTATGTACATGTAT 29369
Query 78704 TACGGTATTGCTGCATGCGGCCCTACATTTCGTAAGTATTTGTGGTGGAAGAGATATCTT 78763
|| || | ||||| || ||||||| ||||| || || |||||||||| |||| |
Sbjct 29370 TATGGATTAGCTGCCTGTGGCCCTAAATTTCAGAAATACCTGTGGTGGAAACGATACTTG 29429
Query 78764 ACTATAATGCAATTG 78778
|| ||| ||||||||
Sbjct 29430 ACCATATTGCAATTG 29444
>seq8137
Length=98436
Score = 113 bits (124), Expect = 1e-19
Identities = 98/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197
||||| ||||| || || ||||| || ||||||||||| || ||||| ||||| ||||||
Sbjct 11070 GTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 11129
Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257
||||||| || ||||| ||||| ||| | |||||||| || ||| | || ||||| ||
Sbjct 11130 CTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAGAT 11189
Query 269258 GA 269259
||
Sbjct 11190 GA 11191
>seq32411
Length=23632
Score = 107 bits (118), Expect = 4e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185
|||||| | |||| |||||||| || || ||||| || |||||||| || ||||||||
Sbjct 20831 GGAGAACGCGTAGTAGCTTTTGCAGCAGTGGAAGGGATCTTCTTTTCAGGCTCTTTTGCA 20772
Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245
| || |||||| ||||||||||||| | ||||| ||| | ||||| ||||| ||| |
Sbjct 20771 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAACTC 20712
Query 269246 ATAAGCAGGGACGA 269259
|| || || || ||
Sbjct 20711 ATCAGTAGAGATGA 20698
>seq40145
Length=14051
Score = 84.2 bits (92), Expect = 5e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429
|||| |||||||| |||||||| || || | || |||||||| || || ||||||||||
Sbjct 484 CTTTTTGAATATTGTAGTCAGACAGCGTGCGTCCATCTTCTAGCTGCTTACCAGCAAAAA 425
Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCT 104458
| || | ||| ||||||||||| || |||
Sbjct 424 TCAGTCGCTGCTGATCAGGAGGAATGCCT 396
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1150486251033348
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |