Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13] 61,831 sequences; 1,129,694,867 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq10553 174 2e-38 seq48794 113 6e-20 >seq10553 Length=23981 Score = 174 bits (192), Expect = 2e-38 Identities = 224/308 (73%), Gaps = 1/308 (0%) Strand=Plus/Plus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| |||| || ||||| ||||| |||||| | |||| || ||| | | ||| Sbjct 18484 GGAAAGCGGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAGGGAGGCAG 18543 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||| ||||| | ||| || |||||||| || |||||||| | |||| Sbjct 18544 TATTGATTATTTCAAAGCCCACTTTTCCTCCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 18603 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| | || |||| || ||||| ||||| ||||| || || | ||| | || Sbjct 18604 AGCAGATGGCATTTCCCATCAGTCCTTTCAGGGAGAACGGTGCTCCAATCTCCACCATCG 18663 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 ||||||| |||||||| || || |||||||| || | | || | ||||| ||||| Sbjct 18664 TCTCACCAAAGATGGCACCTGGTCGCGGCTTTTCTACGAGAAGGCCTGGGTACAGCTCCA 18723 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-T 8977 ||| || |||||||| ||||| | ||||| || || ||||| ||||||||||| Sbjct 18724 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAA 18783 Query 8978 TTATTAAT 8985 |||| ||| Sbjct 18784 TTATCAAT 18791 Score = 125 bits (138), Expect = 1e-23 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 9625 AGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACA 9684 |||| ||| || || ||||| || || ||| ||| || ||||| || ||||||| | Sbjct 20492 AGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCCGGATGCTCCTGTTTCAGGATG 20551 Query 9685 TCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACC 9744 || || || | |||||||||||| ||||| || || || |||||||| | || || ||| Sbjct 20552 TCACAGACCCGGTTGTGTTCCCTCAGCCATATCGTGGCATACATCATCAAGCCTGGGACC 20611 Query 9745 AGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAG 9804 | ||||| |||| || || |||| | ||| | ||| || | | ||||| ||| Sbjct 20612 AAACCAAACACCTCCTGCCCAACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGGTAG 20671 Query 9805 ATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCTG 9863 ||||| | |||| || || |||| || ||||||||||| |||||||| ||||| Sbjct 20672 ATCATCTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCGTCAATCATCTG 20730 >seq48794 Length=17621 Score = 113 bits (124), Expect = 6e-20 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || ||| |||| || |||||||||| || |||||||||||||| | |||| Sbjct 2558 TCTTAACTATCTCAAAGCCGGTTGCTCCGCCGAATGTACTGGGTTTCCAGTACTCTGGGG 2499 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | || || || | |||||| ||||| |||| ||| | |||| Sbjct 2498 AGCAGATGGGGTTTCCAAGCAGCCCCTTCAAGGAAAATGGAGCTCCCATCTCCACCATGC 2439 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || || | ||||| |||| || || | || || || | || ||||||| Sbjct 2438 TTTCCCCAAAAATACCATTGGGTTGGGGTTTCTCAAGCAGCAAGCCCGGATAAAACTCCA 2379 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| || |||||||| || || Sbjct 2378 GAGCATCAATGTCTCCATACAG 2357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707977190038640