Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13] 61,831 sequences; 1,129,694,867 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq49351 113 4e-20 seq40145 82.4 7e-11 >seq49351 Length=2879 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||||| || | || || || || || || ||||| ||| || ||||| | Sbjct 364 CGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 305 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| |||||| | ||||||||| || || |||||||||||| Sbjct 304 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTG 245 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | || | |||||| | ||| || || | ||| | Sbjct 244 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATG 185 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || || || |||||||| Sbjct 184 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 150 >seq40145 Length=14051 Score = 82.4 bits (90), Expect = 7e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 |||||||||||||||| || || |||||| ||| |||||||| || ||||| | | Sbjct 484 CTTTTTGAATATTGTAGTCAGACAGCGTGCGTCCATCTTCTAGCTGCTTACCAGCAAAAA 425 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCC 127011 ||| |||||||||||| ||||| ||||| Sbjct 424 TCAGTCGCTGCTGATCAGGAGGAATGCC 397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475133291375440