Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13] 61,831 sequences; 1,129,694,867 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq10553 159 5e-34 seq48794 120 4e-22 >seq10553 Length=23981 Score = 159 bits (176), Expect = 5e-34 Identities = 213/296 (72%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| |||| || ||||| || ||||| ||| || ||||| ||| | || || | Sbjct 18484 GGAAAGCGGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAGGGAGGCAG 18543 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || || |||||||| || ||||||||| | |||| Sbjct 18544 TATTGATTATTTCAAAGCCCACTTTTCCTCCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 18603 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| | || |||| || ||||||| ||| ||||| || || | ||| | || Sbjct 18604 AGCAGATGGCATTTCCCATCAGTCCTTTCAGGGAGAACGGTGCTCCAATCTCCACCATCG 18663 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 ||||||| ||||||||||| || ||||| ||||| |||| | ||| | ||| || || | Sbjct 18664 TCTCACCAAAGATGGCACCTGGTCGCGGCTTTTCTACGAGAAGGCCTGGGTACAGCTCCA 18723 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| ||||| || |||||| || || || || || || || ||| Sbjct 18724 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 18779 Score = 152 bits (168), Expect = 7e-32 Identities = 174/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 9735 AGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCA 9794 ||| ||||| |||| |||||| ||| |||| ||||| || || ||||| || | || || Sbjct 20497 AGTAGTTTGGAACAGCTGCTCATCATCCCACTCCGGATGCTCCTGTTTCAGGATGTCACA 20556 Query 9795 GACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACC 9854 ||||| ||||||||| ||||||||||| ||||| |||||||| || || || || ||||| Sbjct 20557 GACCCGGTTGTGTTCCCTCAGCCATATCGTGGCATACATCATCAAGCCTGGGACCAAACC 20616 Query 9855 AAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCAT 9914 |||||| || | ||| || | ||| ||| | || || | | || | || | ||| Sbjct 20617 AAACACCTCCTGCCCAACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGGTAGATCAT 20676 Query 9915 ATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 | |||| || || || || || || ||||||||||| |||||||| | ||| Sbjct 20677 CTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCGTCAATCATCTG 20730 Score = 93.3 bits (102), Expect = 6e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 || || |||||||| | ||| || | | || |||| | |||| ||| | ||| Sbjct 19304 ATAGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCGTGTATCTGGAAAGTG 19363 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| || | |||||| ||||||| |||||||| || || || |||||||||||| Sbjct 19364 TCAGGCAGAAGTGGGTGCCAGTGGTAGAGAGTATTGAATTCAGCTGCAATTCGGTTCTGG 19423 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 || ||||| | ||| |||||| | ||| || || || | || | ||||||||| | Sbjct 19424 TATTGAAATCGCTGGT--TGAACAGCAGCTCAGGATCGAACTTGAGTTTGAAGTGGTAGC 19481 Query 9671 CGCTGAGTTGCTGGACATA 9689 | || | || || ||||| Sbjct 19482 CACTCAAGTGTTGCACATA 19500 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| |||| ||||| ||||| | || |||| |||||| || || ||| || Sbjct 23289 CTTACGTGTCGTACAGTTTTCCCCATAATATCCTGTCCTCGTACAGTCACATTCATACCG 23348 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 |||||| || |||||||| || |||| ||||| || |||| || ||||||||||| Sbjct 23349 ATCAAATCCTGTTGTCATGCACACTCCTCTGTTCTGACATGGGTTGGAGCAGCAAGGGTT 23408 Query 10960 GGCTGCAAT 10968 ||||| ||| Sbjct 23409 GGCTGGAAT 23417 >seq48794 Length=17621 Score = 120 bits (132), Expect = 4e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 |||||||| || ||||||||||||||| | |||||||||||| ||| | | ||||| Sbjct 2532 CCGCCGAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGCAGCCCC 2473 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 ||||||||||| ||||| |||| ||| | ||||| || || || || || ||| | Sbjct 2472 TTCAAGGAAAATGGAGCTCCCATCTCCACCATGCTTTCCCCAAAAATACCATTGGGTTGG 2413 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 ||||| || | | ||||| | || | || | ||| || | ||| ||||| || || Sbjct 2412 GGTTTCTCAAGCAGCAAGCCCGGATAAAACTCCAGAGCATCAATGTCTCCATACAGCTCT 2353 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACAA 9179 |||| ||| || || |||| | ||| ||| ||| Sbjct 2352 TCCAGCTCTGCCGCCTTCTCTTCCTCTCCTGCAA 2319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723168639675400