Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13] 61,831 sequences; 1,129,694,867 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq23937 104 9e-17 seq23118 95.1 5e-14 seq7285 84.2 9e-11 >seq23937 Length=27876 Score = 104 bits (114), Expect = 9e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| | || ||| | ||||| || || ||||||||||| | ||||| || || ||| Sbjct 26693 GTTACTAACGCTGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAACGTCAGGCTACT 26634 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| ||||| || | ||||| || |||||||| || || || ||||| Sbjct 26633 AAAGATGCTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAACGAGCCAACAGCT 26574 Query 451433 GCTGCTCTAGCATATGGACT 451452 ||||| |||| ||||| || Sbjct 26573 GCTGCGATAGCCTATGGTCT 26554 >seq23118 Length=2796 Score = 95.1 bits (104), Expect = 5e-14 Identities = 197/291 (68%), Gaps = 7/291 (2%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || || || || || ||||| |||||||| | || || || || || ||||||| Sbjct 2011 ATGCTGTCATCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATG 1952 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | || || |||| | ||||| | || ||||| ||||| || |||||||||||| Sbjct 1951 CTGGCACCATCACTGGCCTTAATGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTA 1892 Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAA-----ACAGAAGaaaaaaaTATTTTAGTATT 451494 |||| ||||| || ||| || ||| | | | | ||| || || | | | || Sbjct 1891 TAGCCTATGG-CTTGGACAA-GAAAGGTACCCGGGCTGGAGAGAAGAACGTGCTCATCTT 1834 Query 451495 TGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGA 451554 ||| || || || || ||| ||| || | ||| | ||||| ||||| | ||||| Sbjct 1833 TGACTTGGGAGGGGGCACTTTCGATGTGTCCATCCTTACCATTGAGGATGGCATCTTTGA 1774 Query 451555 AGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || ||| | || |||||| || ||||| || || || || |||| || Sbjct 1773 GGTGAAGTCTACAGCTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAA 1723 Score = 86.0 bits (94), Expect = 2e-11 Identities = 182/268 (68%), Gaps = 3/268 (1%) Strand=Plus/Minus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 || |||||| | | ||||| | || || ||||| | || || || || || || Sbjct 2338 GGCAAGCCCAAGGTGCAAGTGGAGTACAAGGGTGAGATGAAGACCTTCTTCCCAGAGGAG 2279 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 || || ||||| ||||| || ||||| || | || || ||| | || | | | Sbjct 2278 ATCAGCTCCATGGTCCTTACCAAGATGAAGGAGATTGCCGAGGCTTATCTGGGG-CGCAA 2220 Query 451313 GTTACTGA-TGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 | | | || ||| || || || || || ||||| |||||||| | || || || || || Sbjct 2219 GGTGCAGAATGCTGTCATCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCAC 2160 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 |||||||| || || |||| | ||||| | || ||||| ||||| || ||||| Sbjct 2159 CAAAGATGCTGGCACCATCACTGGCCTTAATGTGATGCGTATTATCAATGAGCCCACAGC 2100 Query 451432 AGCTGCTCTAGCATATGGACTAGGAAAA 451459 ||||||| |||| ||||| || ||| || Sbjct 2099 AGCTGCTATAGCCTATGG-CTTGGACAA 2073 >seq7285 Length=7271 Score = 84.2 bits (92), Expect = 9e-11 Identities = 83/107 (78%), Gaps = 3/107 (3%) Strand=Plus/Minus Query 451190 AAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAA---ACTAAAACTTTTGCTCCT 451246 |||| |||||| |||||||||| || | ||||| | || ||||| ||||||||| Sbjct 6688 AAAGCCAAGCCCCATATTCAAGTTGATGTTGGAGGTGGACAGACAAAAACATTTGCTCCT 6629 Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGA 451293 ||||||||||| ||||||| | || || ||||| ||||| ||||| Sbjct 6628 GAAGAAATTTCTGCTATGGTCTTGACAAAGATGAAGGAAACTGCAGA 6582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974153216743748