Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13]
61,831 sequences; 1,129,694,867 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq23937 104 9e-17
seq23118 95.1 5e-14
seq7285 84.2 9e-11
>seq23937
Length=27876
Score = 104 bits (114), Expect = 9e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372
|||||| | || ||| | ||||| || || ||||||||||| | ||||| || || |||
Sbjct 26693 GTTACTAACGCTGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAACGTCAGGCTACT 26634
Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432
|||||||| ||| ||||| || | ||||| || |||||||| || || || |||||
Sbjct 26633 AAAGATGCTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAACGAGCCAACAGCT 26574
Query 451433 GCTGCTCTAGCATATGGACT 451452
||||| |||| ||||| ||
Sbjct 26573 GCTGCGATAGCCTATGGTCT 26554
>seq23118
Length=2796
Score = 95.1 bits (104), Expect = 5e-14
Identities = 197/291 (68%), Gaps = 7/291 (2%)
Strand=Plus/Minus
Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379
|||| || || || || || ||||| |||||||| | || || || || || |||||||
Sbjct 2011 ATGCTGTCATCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATG 1952
Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439
| || || |||| | ||||| | || ||||| ||||| || ||||||||||||
Sbjct 1951 CTGGCACCATCACTGGCCTTAATGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTA 1892
Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAA-----ACAGAAGaaaaaaaTATTTTAGTATT 451494
|||| ||||| || ||| || ||| | | | | ||| || || | | | ||
Sbjct 1891 TAGCCTATGG-CTTGGACAA-GAAAGGTACCCGGGCTGGAGAGAAGAACGTGCTCATCTT 1834
Query 451495 TGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGA 451554
||| || || || || ||| ||| || | ||| | ||||| ||||| | |||||
Sbjct 1833 TGACTTGGGAGGGGGCACTTTCGATGTGTCCATCCTTACCATTGAGGATGGCATCTTTGA 1774
Query 451555 AGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605
|| ||| | || |||||| || ||||| || || || || |||| ||
Sbjct 1773 GGTGAAGTCTACAGCTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAA 1723
Score = 86.0 bits (94), Expect = 2e-11
Identities = 182/268 (68%), Gaps = 3/268 (1%)
Strand=Plus/Minus
Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252
|| |||||| | | ||||| | || || ||||| | || || || || || ||
Sbjct 2338 GGCAAGCCCAAGGTGCAAGTGGAGTACAAGGGTGAGATGAAGACCTTCTTCCCAGAGGAG 2279
Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312
|| || ||||| ||||| || ||||| || | || || ||| | || | | |
Sbjct 2278 ATCAGCTCCATGGTCCTTACCAAGATGAAGGAGATTGCCGAGGCTTATCTGGGG-CGCAA 2220
Query 451313 GTTACTGA-TGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371
| | | || ||| || || || || || ||||| |||||||| | || || || || ||
Sbjct 2219 GGTGCAGAATGCTGTCATCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCAC 2160
Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431
|||||||| || || |||| | ||||| | || ||||| ||||| || |||||
Sbjct 2159 CAAAGATGCTGGCACCATCACTGGCCTTAATGTGATGCGTATTATCAATGAGCCCACAGC 2100
Query 451432 AGCTGCTCTAGCATATGGACTAGGAAAA 451459
||||||| |||| ||||| || ||| ||
Sbjct 2099 AGCTGCTATAGCCTATGG-CTTGGACAA 2073
>seq7285
Length=7271
Score = 84.2 bits (92), Expect = 9e-11
Identities = 83/107 (78%), Gaps = 3/107 (3%)
Strand=Plus/Minus
Query 451190 AAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAA---ACTAAAACTTTTGCTCCT 451246
|||| |||||| |||||||||| || | ||||| | || ||||| |||||||||
Sbjct 6688 AAAGCCAAGCCCCATATTCAAGTTGATGTTGGAGGTGGACAGACAAAAACATTTGCTCCT 6629
Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGA 451293
||||||||||| ||||||| | || || ||||| ||||| |||||
Sbjct 6628 GAAGAAATTTCTGCTATGGTCTTGACAAAGATGAAGGAAACTGCAGA 6582
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1974153216743748
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |