Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13] 61,831 sequences; 1,129,694,867 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq23937 118 8e-21 seq31781 96.9 3e-14 >seq23937 Length=27876 Score = 118 bits (130), Expect = 8e-21 Identities = 363/554 (66%), Gaps = 18/554 (3%) Strand=Plus/Plus Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 |||||||| || ||||||||||||||||| | | | || |||| ||| |||||||| Sbjct 25888 GCACCATAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAGTTCTTTGCCATTGAAG 25947 Query 517670 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728 || | || |||| ||| | ||| || || |||| || || ||||| | || || Sbjct 25948 AAGTCCTGCAGCAGTT-TCTGAATCTTTGGGATGCGAGTAGACCCACCAACCAGCACGAT 26006 Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788 ||||| | ||| ||||| || ||||| | |||| | | ||||| || || || || Sbjct 26007 GTCATGGATCTGCGATTTGTCAAGTTTGGCATCCCGCAGGGCCTTTTCCACAGGATCCAG 26066 Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GA-GTGAC 517845 | | |||| ||| | || ||||| || |||||| |||| || ||| Sbjct 26067 GGTGCCACGGAACAGGTCAGCGTTCAGCTCTTCAAAGCGAGCTCTGGTAATGGATGTG-- 26124 Query 517846 ATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAG 517904 || || ||||| || || | | |||||||| |||||| | | || || ||||| Sbjct 26125 --TAGAAGTCAATACCCTCATAGAGAGAATCAATTTCAATACTGGCCTGCGTGCTAGAAG 26182 Query 517905 ATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG----CTTTTGCT 517960 | || | ||| || ||||| || ||||| || | || | || | | ||| | || Sbjct 26183 ACAGAGTACGCTTTGCACGCTCGCATGCGGTGCGGAGGCGACGAACTGCTCTCTTGTTCT 26242 Query 517961 GATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGA 518020 | |||| ||| | || | || | |||||| || ||| | | || | Sbjct 26243 CACTGAT----GTCTTTCTTGTGCTTGCGCTTGAATTCAGCAATGAAGTGGTTGACCATG 26298 Query 518021 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 518080 || || ||||| ||||| || ||||| | ||| | |||| || | | | || | || Sbjct 26299 CGGTTGTCAAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAG 26358 Query 518081 AGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 | |||||||||| || || || | |||||| ||| ||||| || | ||||| ||| Sbjct 26359 ATGCCATCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAGATA 26418 Query 518141 AGTACATTCATTTC 518154 || |||||| |||| Sbjct 26419 AGAACATTCCTTTC 26432 Score = 104 bits (114), Expect = 2e-16 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||||| |||||||||||||| |||||| |||| | || || ||||| || |||| Sbjct 27532 CAAAAACTGTATTGGTTGGATTCATTGCAACTTGGTTCTTTGCAGCATCGCCGATCAACC 27591 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 ||||| ||||| || | ||| || || || || || ||||| || ||||| |||| Sbjct 27592 TCTCTGTATCTGTGAAGGCAACGTAGCTCGGTGTGGTCCGGTTACCCTGGTCATTAGCAA 27651 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||| || || |||| || ||||||| ||||| | | || || || | ||||| Sbjct 27652 TGATTTCCACCTTCCCATGCTGGAATACACCAACACAGGAATAGGTGGTGCCAAGATCAA 27711 Query 518703 TACCAATAGC 518712 | || | ||| Sbjct 27712 TTCCGACAGC 27721 Score = 102 bits (112), Expect = 6e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || |||||||| || | |||||||| ||||| || || ||||||| || ||| Sbjct 26545 TTTTTGTCCAGACCATAGGCTATCGCAGCAGCTGTTGGCTCGTTGATAATTCGCAGTACA 26604 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || || ||||| |||| ||||||||||| || || | ||| || || || ||||| Sbjct 26605 TTGAGCCCTGCAATGGTTCCAGCATCTTTAGTAGCCTGACGTTGAGAGTCATTGAAATAG 26664 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC 518313 || || ||||| | || || | ||| || Sbjct 26665 GCTGGTACAGTCACTACAGCGTTAGTAAC 26693 >seq31781 Length=47885 Score = 96.9 bits (106), Expect = 3e-14 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| || || ||| | |||||||| ||||| || |||||| | ||| | | | ||||| Sbjct 22150 TGTTGTGGCTACAGTGGCATTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 22091 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 |||||| || || || ||| | || ||| ||||||||||||||||| ||||| ||||| Sbjct 22090 TCATTACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCG 22031 Query 367113 TGATGG 367118 ||||| Sbjct 22030 CGATGG 22025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3777754142108686