Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13] 61,831 sequences; 1,129,694,867 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq49351 122 2e-22 seq40145 84.2 5e-11 >seq49351 Length=2879 Score = 122 bits (134), Expect = 2e-22 Identities = 152/207 (73%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||| || || || || ||||| |||| || || | ||||||||| ||||| Sbjct 353 GTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTG 294 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || | || || || || |||||||| || ||||| || || || Sbjct 293 CTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTT 234 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 |||||| |||||||||||||| ||| || || || ||||| | ||||| || Sbjct 233 GGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATGGTCTTGCC 177 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || ||||| | ||||| Sbjct 176 CGTCAGGGTCTTCACGAAGATCTGCAT 150 >seq40145 Length=14051 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||||||||||||||| || | || || | |||||||| ||||||||||| || || | Sbjct 484 CTTTTTGAATATTGTAGTCAGACAGCGTGCGTCCATCTTCTAGCTGCTTACCAGCAAAAA 425 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | ||||| || || || |||||||||||| Sbjct 424 TCAGTCGCTGCTGATCAGGAGGAATGCCT 396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108602657928377