Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13]
61,831 sequences; 1,129,694,867 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq32411 123 3e-23
seq8137 105 8e-18
seq34904 84.2 2e-11
>seq32411
Length=23632
Score = 123 bits (136), Expect = 3e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| |||||||| || | |||||||||||| || | |||||||| | ||||||||| |
Sbjct 20696 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 20755
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||| || || || ||||| || || |||||||| || ||||| |||||||||||||
Sbjct 20756 TCAGCCAAAAAATTGATGCAAAAGAGCCTGAAAAGAAGATCCCTTCCACTGCTGCAAAAG 20815
Query 19103 CAACTAGTCTTTCTCC 19118
| |||| | ||||||
Sbjct 20816 CTACTACGCGTTCTCC 20831
Score = 86.0 bits (94), Expect = 7e-12
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283
|||||||| || | || || | | |||||||||||||||||| |||||||| || ||
Sbjct 22827 ATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 22886
Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328
||||| || || || ||||| | |||||||| || ||||||||
Sbjct 22887 AATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 22931
>seq8137
Length=98436
Score = 105 bits (116), Expect = 8e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | |||||| || || || | ||||||||||| || || || |
Sbjct 11193 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 11134
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||| ||||||| |||||| || || |||||||| || ||||| ||||| ||||| |
Sbjct 11133 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 11074
Query 19103 CAACTAGTCTTTCTCC 19118
|||| | ||| || ||
Sbjct 11073 CAACCACTCTCTCACC 11058
>seq34904
Length=29476
Score = 84.2 bits (92), Expect = 2e-11
Identities = 91/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 47933 TATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTT 47992
|||||| | ||| ||||| | |||||||| || ||||| || || ||||| |
Sbjct 10487 TATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTGCTCTTCCG 10428
Query 47993 GTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGAT 48052
||| || | ||| ||||| ||||| | ||||| || || ||| ||||||||||||||||
Sbjct 10427 GTTGCAAGAGTCTTTGTACAGCATGTACGGTGTGCCGGTCTCTGTCTGAGATTCAATGAT 10368
Query 48053 AG 48054
||
Sbjct 10367 AG 10366
Score = 84.2 bits (92), Expect = 2e-11
Identities = 120/169 (71%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109
|||| |||||||| ||||| || || | ||| ||| | ||||| | ||| || || |
Sbjct 16852 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGTTCCGCAATGTGGATGT 16793
Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169
| ||||| || ||||||||||| || || ||||| || |||||||| | | |||
Sbjct 16792 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 16733
Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218
| || | |||||||| || || ||||| | || || | ||| || ||
Sbjct 16732 TCTGGGAGATCTCCCACACCGTCTTATAGAGCTGCTTCAAGTCATCAGG 16684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561674353134840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |