Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13]
61,831 sequences; 1,129,694,867 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq23937 131 1e-24
seq23118 107 2e-17
>seq23937
Length=27876
Score = 131 bits (144), Expect = 1e-24
Identities = 117/147 (80%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450
||||| | || ||| | ||||||||||| ||||| |||||||| |||||||| ||||||
Sbjct 26693 GTTACTAACGCTGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAACGTCAGGCTACT 26634
Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510
|||||||||||| ||||| || || ||||| || || |||||||| || || || |||
Sbjct 26633 AAAGATGCTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAACGAGCCAACAGCT 26574
Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537
||||| | || ||||| || || |||
Sbjct 26573 GCTGCGATAGCCTATGGTCTGGACAAA 26547
Score = 86.0 bits (94), Expect = 5e-11
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566
|||||||| |||||||| | || ||||| || |||||||| || || ||||| ||||||
Sbjct 24954 GGTATTCCCCCTGCTCCCAGAGGCGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 24895
Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAA 552598
||||| || |||||||| ||||| |||||
Sbjct 24894 AATGGCATCCTGAATGTGTCTGCTGTGGATAA 24863
>seq23118
Length=2796
Score = 107 bits (118), Expect = 2e-17
Identities = 353/546 (65%), Gaps = 11/546 (2%)
Strand=Plus/Minus
Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051
|| || || || || || || ||||| || || || ||||| | || |||| |||
Sbjct 2617 GCAATCGGCATCGACTTGGGCACCACGTACTCCTGCGTGGGTGTCTTCCAGCATGGCAAA 2558
Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111
|| || || || |||||||| || || ||| | || || || ||||| | |||||
Sbjct 2557 GTGGAGATCATCGCCAATGACCAGGGCAACCGCACCACACCCAGCTATGTGGCCTTCACT 2498
Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171
|| || || | | | |||||||| || || | || | || || ||||||||
Sbjct 2497 GATACAGAGCGCCTCATCGGTGATGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 2438
Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231
|| || || ||||| || ||| | ||||| | | | | |||| | || || ||| |
Sbjct 2437 ACCATCTTCGATGCCAAGCGTCTCATTGGCCGCAAGTATGATGACCCCACGGTGCAGTCT 2378
Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGC- 550290
|| |||||||| ||||| |||| | || || | ||| || || | | |||
Sbjct 2377 GACATGAAGCACTGGCCCTTCCGTGTGGTGAACGAGAGTGGCAAGCCCAAGGTGCAAGTG 2318
Query 550291 ---TACTCATGAAGGATCTGTTAAACAATTT-TCACCAGAACAAATTTCATCTATGGTTT 550346
||| |||| | | | || | || | ||||| | || || |||||
Sbjct 2317 GAGTAC-----AAGGGTGAGATGAAGACCTTCTTCCCAGAGGAGATCAGCTCCATGGTCC 2263
Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406
| | || ||||| | | ||| |||| | | || | | || | |||| || |
Sbjct 2262 TTACCAAGATGAAGGAGATTGCCGAGGCTTATCTGGGGCGCAAGGTGCAGAATGCTGTCA 2203
Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466
| || || || || || || |||||||| || || || || || ||||||||||| |
Sbjct 2202 TCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACCA 2143
Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526
| |||| |||||||| | |||||||||||||| || || || ||||| | || ||||
Sbjct 2142 TCACTGGCCTTAATGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTATAGCCTATG 2083
Query 550527 GACTTG 550532
| ||||
Sbjct 2082 G-CTTG 2078
Score = 87.8 bits (96), Expect = 1e-11
Identities = 101/135 (75%), Gaps = 1/135 (1%)
Strand=Plus/Minus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| || || || || || || || || |||||||| || || || || || |||||||
Sbjct 2011 ATGCTGTCATCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATG 1952
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
|||| || |||| |||||||| | |||||||||||||| || || || |||||
Sbjct 1951 CTGGCACCATCACTGGCCTTAATGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTA 1892
Query 550518 TTGCATATGGACTTG 550532
| || ||||| ||||
Sbjct 1891 TAGCCTATGG-CTTG 1878
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4026026097862190
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |