Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13]
61,831 sequences; 1,129,694,867 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq44559 111 1e-19
seq33477 91.5 1e-13
>seq44559
Length=13795
Score = 111 bits (122), Expect = 1e-19
Identities = 138/184 (75%), Gaps = 4/184 (2%)
Strand=Plus/Plus
Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209
||| || |||| || ||||| || |||||||||||||| || || || ||||||| ||
Sbjct 11852 CATATCTTTGTATTCGGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATC 11911
Query 30210 TCCCTCTTCCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268
||||| || || ||||| ||| ||| ||| |||| || || | || || || || |
Sbjct 11912 CCCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCAT 11970
Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30328
|||| ||||| || ||||| | ||||||||||||| ||||| || || || || || |
Sbjct 11971 CCCAAATCTTCACACCCTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAAC 12028
Query 30329 ACAG 30332
||||
Sbjct 12029 ACAG 12032
>seq33477
Length=7394
Score = 91.5 bits (100), Expect = 1e-13
Identities = 85/108 (79%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161
|| |||||||||||||| |||| || || |||||| | | ||| | |||||| || ||
Sbjct 4392 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAAAGGACGATTCTTCTCAGGA 4451
Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209
||||||||||| || ||| |||||||||||| | ||||| || |||
Sbjct 4452 ATGGAGAACCAGGTTTTTTTACCCATTATCAGGGCATTCTGTTTACCT 4499
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408309679950563
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |