Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13]
61,831 sequences; 1,129,694,867 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq23118 262 5e-65
seq23937 206 3e-48
seq7285 122 1e-22
seq40145 98.7 1e-15
>seq23118
Length=2796
Score = 262 bits (290), Expect = 5e-65
Identities = 777/1188 (65%), Gaps = 34/1188 (3%)
Strand=Plus/Minus
Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767
|||| || | || || ||||||||||||| ||| || || || ||||| || || || |
Sbjct 2011 ATGCTGTCATCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATG 1952
Query 195768 CTGCTGCTATTGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCA 195826
||| | || | || || || ||| | | ||||||||||| || ||||| |||||
Sbjct 1951 CTGGCACCATCACTGGCCTTAA-TGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCT 1893
Query 195827 ATTGCTTATGGTCTGGACAAGAA------CAAGGACGAAGATAAAAATGTATTGATCTTT 195880
|| || ||||| |||||||||| | || | ||| || || || | ||||||
Sbjct 1892 ATAGCCTATGGCTTGGACAAGAAAGGTACCCGGGCTGGAGAGAAGAACGTGCTCATCTTT 1833
Query 195881 GATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAA 195940
|| | || || || || || ||||| || | || | ||||| | ||| || || ||
Sbjct 1832 GACTTGGGAGGGGGCACTTTCGATGTGTCCATCCTTACCATTGAGGATGGCATCTTTGAG 1773
Query 195941 GTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTC 196000
|| ||| |||| |||||||| || ||||| ||||| || || || || || | |
Sbjct 1772 GTGAAGTCTACAGCTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAACCGCATGGTG 1713
Query 196001 CGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGG 196060
||||| || || ||| || ||| | ||| || ||| |||| || |
Sbjct 1712 AACCATTTTGTGGAAGAATTCAAGCGTAAGCACAAGCGTGACATTGCTGGCAACAAGCGA 1653
Query 196061 GCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTC---TCTTCTACG 196117
|| | | || || | || || ||||| | || || || |||||| ||||| |||
Sbjct 1652 GCAGTGAGGCGACTGCGTACAGCTTGTGAGAGGGCAAAGCGCACTCTCAGCTCTTCCACG 1593
Query 196118 GCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATT 196177
||| | | | ||||| || || | | || || ||||||||||| || | |||
Sbjct 1592 ---CAAGCTAGCATCGAGATCGACTCCCTCTACGAGGGTATTGACTTCTACACCTCCATT 1536
Query 196178 ACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTT 196237
|| ||||| || || || ||| | || ||||| | || | |||| || ||
Sbjct 1535 ACTCGTGCTCGCTTCGAGGAGCTCAATGCTGATCTCTTCCGTGGCACCCTGGAGCCAGTG 1476
Query 196238 GAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTG 196297
|| | | || ||||| || ||| | || ||| || | | || ||||| || |||
Sbjct 1475 GAGAAGGCTCTGCGTGATGCCAAGCTAGACAAGGGCCAGATCCAGGAGATTGTGCTGGTG 1416
Query 196298 GGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAA 196357
|| || || || ||||| || ||||| ||| || |||| |||||||||| |||
Sbjct 1415 GGTGGCTCCACTCGTATCCCCAAGATCCAAAAGCTGCTACAGGACTTCTTCAATGGCAAA 1356
Query 196358 GATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCT 196417
|| | ||||| | |||||||| ||||| || |||||||| || || || || || ||
Sbjct 1355 GAGCTCAACAAGAGCATCAACCCCGATGAGGCTGTTGCTTACGGCGCTGCTGTGCAAGCA 1296
Query 196418 GCTATTCTCTCAGGTGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTT 196474
||||| |||| | | ||||| | | || || || ||||| |||| | |||||
Sbjct 1295 GCTAT--CCTCATG-GGAGACAAGTCTGAGAATGTGCAGGATCTGTTGCTGTTGGATGTC 1239
Query 196475 GCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGG 196534
| || | |||||||| | || ||||| ||||| || |||||| | || | |
Sbjct 1238 ACCCCTCTGTCCCTGGGCATCGAGACAGCTGGTGGAGTGATGACTGCTCTCATCAAGCGC 1179
Query 196535 AACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCA 196594
||||| || ||||| || || | || ||| | || || || || ||||||
Sbjct 1178 AACACCACCATTCCCACCAAACAAACTCAGACCTTCACCACCTACTCGGA----CAACCA 1123
Query 196595 G----GTGTTCATATTCAAGTATATGAAG--GAGAACGCTCCCGTG-CAAAGGATAACCA 196647
| | || | | || || || || | |||| ||| || ||||||| ||| |
Sbjct 1122 GAGTAGCGTCCTGGTCCAGGTGTACGAGGGTGAGAGGGCT---ATGACAAAGGACAACAA 1066
Query 196648 TCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGAT 196707
| || || | || || | ||||| || || | || ||| | || || || |||||
Sbjct 1065 CTTGCTGGGCAAATTTGACCTAACGGGCATCCCCCCGGCGCCCCGTGGAGTCCCCCAGAT 1006
Query 196708 TAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGC 196767
| | || || || || || || ||||| || || ||||||| || | |||||||
Sbjct 1005 TGAGGTCACTTTTGACATCGATGCCAATGGTATCCTGAACGTCAGTGCCGTGGACAAGAG 946
Query 196768 TTCTGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGA 196827
| || || | ||||| || |||||||||||||| || ||| ||||| ||
Sbjct 945 CACGGGTAAGGAGAACAAGATCACCATCACCAATGACAAGGGTCGCCTTAGCAAGGATGA 886
Query 196828 AATTGAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGA 196875
||||| |||||||| ||||| || || || |||| | ||| || ||
Sbjct 885 CATTGACCGTATGGTGCAAGAAGCAGAGAAATACAAAGCAGAGGATGA 838
Score = 159 bits (176), Expect = 5e-34
Identities = 372/554 (67%), Gaps = 9/554 (2%)
Strand=Plus/Minus
Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358
|| || || ||||| || || || || ||||| || || ||||| | || |||
Sbjct 2617 GCAATCGGCATCGACTTGGGCACCACGTACTCCTGCGTGGGTGTCTTCCAGCATGGCAAA 2558
Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418
|| ||||| ||| | |||||||| || ||||| || || || || || ||||| ||
Sbjct 2557 GTGGAGATCATCGCCAATGACCAGGGCAACCGCACCACACCCAGCTATGTGGCCTTCACT 2498
Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478
|||| || || ||| | || ||||| || || || ||| ||||||||||||| |||
Sbjct 2497 GATACAGAGCGCCTCATCGGTGATGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 2438
Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538
|| |||| || || |||||||| ||||| ||||||| | || | || ||
Sbjct 2437 ACCATCTTCGATGCCAAGCGTCTCATTGGCCGCAAGTATGATGACCCCACGGTGCAGTCT 2378
Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCG-GTGTGGCTGATAAGCCTATGATTAA 195597
|| || ||| ||||| | | || || || | ||||| ||||| | | | |
Sbjct 2377 GACATGAAGCACTGGCCCTTCCGTGTGGTGAACGAGAGTGGC----AAGCCCAAGGTGCA 2322
Query 195598 TGTTGAATTTCACGGTGAGAAGAA-ACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGT 195656
|| || | | ||||||| ||| || | | | || || || || || |||||
Sbjct 2321 AGTGGAGTACAAGGGTGAGATGAAGACCTTCTTC-CCAGAGGAGATCAGCTCCATGGTCC 2263
Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716
| | ||||||||||||| ||| || ||| |||| | ||| | |||| ||
Sbjct 2262 TTACCAAGATGAAGGAGATTGCCGAGGCTTATCTGGGGCGCAAGGTGCAGAATGCTGTCA 2203
Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776
| || || ||||||||||||| ||| || || || ||||| || || || |||| | |
Sbjct 2202 TCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACCA 2143
Query 195777 TTGCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835
| | || || || ||| | | ||||||||||| || ||||| ||||| || || |||
Sbjct 2142 TCACTGGCCTTAA-TGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTATAGCCTAT 2084
Query 195836 GGTCTGGACAAGAA 195849
|| ||||||||||
Sbjct 2083 GGCTTGGACAAGAA 2070
>seq23937
Length=27876
Score = 206 bits (228), Expect = 3e-48
Identities = 369/539 (68%), Gaps = 0/539 (0%)
Strand=Plus/Minus
Query 195866 AATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAA 195925
||||| | |||||||| || || ||||| || |||||||| ||| |||| | |||||||
Sbjct 26426 AATGTTCTTATCTTTGACCTTGGAGGTGGCACCTTTGATGTGTCAATTCTGACTATTGAA 26367
Query 195926 GGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTC 195985
| ||| || || || || || | ||||| ||||| ||||| | ||||| ||||| ||
Sbjct 26366 GATGGCATCTTTGAGGTGAAATCCACTGCAGGTGACACTCACTTGGGTGGAGAAGACTTT 26307
Query 195986 GATGCACGTCTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATT 196045
|| || | || || || || ||| ||| || ||| | |||||||| ||
Sbjct 26306 GACAACCGCATGGTCAACCACTTCATTGCTGAATTCAAGCGCAAGCACAAGAAAGACATC 26247
Query 196046 TCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACT 196105
|| || || || ||||||| || | || ||||| || ||||| || || |||
Sbjct 26246 AGTGAGAACAAGAGAGCAGTTCGTCGCCTCCGCACCGCATGCGAGCGTGCAAAGCGTACT 26187
Query 196106 CTCTCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTC 196165
|| ||||||| | || | | |||| |||||||| | | ||| || |||||||||
Sbjct 26186 CTGTCTTCTAGCACGCAGGCCAGTATTGAAATTGATTCTCTCTATGAGGGTATTGACTTC 26127
Query 196166 TATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGT 196225
|| ||| | |||||| | || || ||||||||| | ||| |||| |||| |
Sbjct 26126 TACACATCCATTACCAGAGCTCGCTTTGAAGAGCTGAACGCTGACCTGTTCCGTGGCACC 26067
Query 196226 ATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAA 196285
|||| ||||| ||| | | || || || || || | || || || || | ||||
Sbjct 26066 CTGGATCCTGTGGAAAAGGCCCTGCGGGATGCCAAACTTGACAAATCGCAGATCCATGAC 26007
Query 196286 ATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTC 196345
|| || || || || || || || || || || |||||||| | |||| ||||
Sbjct 26006 ATCGTGCTGGTTGGTGGGTCTACTCGCATCCCAAAGATTCAGAAACTGCTGCAGGACTTC 25947
Query 196346 TTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGC 196404
|||||| ||||| | ||||| | ||||| || |||||||| || |||||||||||
Sbjct 25946 TTCAATGGCAAAGAACTGAACAAGAGCATCAATCCTGATGAAGCTGTGGCTTATGGTGC 25888
Score = 107 bits (118), Expect = 3e-18
Identities = 110/141 (78%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 195710 GCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCT 195769
|| || ||||||||||| || || |||| ||| || ||||| ||||| || || || |||
Sbjct 26684 GCTGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAACGTCAGGCTACTAAAGATGCT 26625
Query 195770 GCTGCTATTGCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAAT 195828
| | ||||| || || || ||| || |||||||||| || |||||||| ||||| ||
Sbjct 26624 GGAACCATTGCAGGGCTCAA-TGTACTGCGAATTATCAACGAGCCAACAGCTGCTGCGAT 26566
Query 195829 TGCTTATGGTCTGGACAAGAA 195849
|| |||||||||||||| ||
Sbjct 26565 AGCCTATGGTCTGGACAAAAA 26545
Score = 91.5 bits (100), Expect = 2e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 196607 CAAGTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGA 196665
|| ||||||||||||||||| | | || | ||||| ||| | | || || | || ||
Sbjct 25020 CAGGTATATGAAGGAGAACG-TGCTATGACTAAGGACAACAACTTGCTGGGCAAGTTTGA 24962
Query 196666 TTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATAT 196725
|||| || ||||| |||| |||||||| || || |||||| | || ||| |||||
Sbjct 24961 GCTGACTGGTATTCCCCCTGCTCCCAGAGGCGTACCTCAGATTGAAGTAACCTTTGATAT 24902
Query 196726 AGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAA 196785
|| || ||||| || || || || | |||| ||| ||| ||||||| | ||
Sbjct 24901 TGATGCCAATGGCATCCTGAATGTGTCTGCTGTGGATAAGAGCACTGGCAAGGAGAACAA 24842
Query 196786 GATTGTGATTACCAATGACAAGGG 196809
||| ||| || |||||||||||
Sbjct 24841 GATCACGATAACAAATGACAAGGG 24818
>seq7285
Length=7271
Score = 122 bits (134), Expect = 1e-22
Identities = 171/240 (71%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 196637 AAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGT 196696
|||||||| ||||| || |||||||| ||| |||| || || || |||| || | |||
Sbjct 4360 AAGGATAATCATCTTCTGGGAACTTTTGATCTGACTGGAATCCCTCCTGCCCCTCGTGGT 4301
Query 196697 GTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCT 196756
|| || |||||| | ||| ||| || ||||| | |||||||| || |||||||||
Sbjct 4300 GTCCCCCAGATTGAAGTTACCTTTGAAATAGATGTGAATGGAATCCTGCGTGTCACAGCT 4241
Query 196757 GAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTT 196816
|| ||||||| |||| || | ||||| ||||| |||||| || |||||
Sbjct 4240 GAAGACAAGGGCACTGGGAACAAAAACAAGATCACAATTACAAATGACCAGAATCGGCTG 4181
Query 196817 TCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAG 196876
| ||| |||||||| | |||||| | ||||| || |||| ||| |||||| ||
Sbjct 4180 ACACCGGAAGAAATTGAGAGGATGGTTAACGATGCTGAGAAGTTTGCGGAGGAAGACAAG 4121
>seq40145
Length=14051
Score = 98.7 bits (108), Expect = 1e-15
Identities = 74/87 (85%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022
||||||||| || |||||||| ||||| |||||||||||||| ||||| |||||||||||
Sbjct 396 AGGCATTCCTCCTGATCAGCAGCGACTGATTTTTGCTGGTAAGCAGCTAGAAGATGGACG 455
Query 172023 TACCCTCGCTGATTACAACGTTCAAAA 172049
|| || |||| ||||| |||||||
Sbjct 456 CACGCTGTCTGACTACAATATTCAAAA 482
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657353946374320
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