Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13] 61,831 sequences; 1,129,694,867 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq23118 262 5e-65 seq23937 206 3e-48 seq7285 122 1e-22 seq40145 98.7 1e-15 >seq23118 Length=2796 Score = 262 bits (290), Expect = 5e-65 Identities = 777/1188 (65%), Gaps = 34/1188 (3%) Strand=Plus/Minus Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767 |||| || | || || ||||||||||||| ||| || || || ||||| || || || | Sbjct 2011 ATGCTGTCATCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATG 1952 Query 195768 CTGCTGCTATTGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCA 195826 ||| | || | || || || ||| | | ||||||||||| || ||||| ||||| Sbjct 1951 CTGGCACCATCACTGGCCTTAA-TGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCT 1893 Query 195827 ATTGCTTATGGTCTGGACAAGAA------CAAGGACGAAGATAAAAATGTATTGATCTTT 195880 || || ||||| |||||||||| | || | ||| || || || | |||||| Sbjct 1892 ATAGCCTATGGCTTGGACAAGAAAGGTACCCGGGCTGGAGAGAAGAACGTGCTCATCTTT 1833 Query 195881 GATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAA 195940 || | || || || || || ||||| || | || | ||||| | ||| || || || Sbjct 1832 GACTTGGGAGGGGGCACTTTCGATGTGTCCATCCTTACCATTGAGGATGGCATCTTTGAG 1773 Query 195941 GTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTC 196000 || ||| |||| |||||||| || ||||| ||||| || || || || || | | Sbjct 1772 GTGAAGTCTACAGCTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAACCGCATGGTG 1713 Query 196001 CGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGG 196060 ||||| || || ||| || ||| | ||| || ||| |||| || | Sbjct 1712 AACCATTTTGTGGAAGAATTCAAGCGTAAGCACAAGCGTGACATTGCTGGCAACAAGCGA 1653 Query 196061 GCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTC---TCTTCTACG 196117 || | | || || | || || ||||| | || || || |||||| ||||| ||| Sbjct 1652 GCAGTGAGGCGACTGCGTACAGCTTGTGAGAGGGCAAAGCGCACTCTCAGCTCTTCCACG 1593 Query 196118 GCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATT 196177 ||| | | | ||||| || || | | || || ||||||||||| || | ||| Sbjct 1592 ---CAAGCTAGCATCGAGATCGACTCCCTCTACGAGGGTATTGACTTCTACACCTCCATT 1536 Query 196178 ACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTT 196237 || ||||| || || || ||| | || ||||| | || | |||| || || Sbjct 1535 ACTCGTGCTCGCTTCGAGGAGCTCAATGCTGATCTCTTCCGTGGCACCCTGGAGCCAGTG 1476 Query 196238 GAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTG 196297 || | | || ||||| || ||| | || ||| || | | || ||||| || ||| Sbjct 1475 GAGAAGGCTCTGCGTGATGCCAAGCTAGACAAGGGCCAGATCCAGGAGATTGTGCTGGTG 1416 Query 196298 GGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAA 196357 || || || || ||||| || ||||| ||| || |||| |||||||||| ||| Sbjct 1415 GGTGGCTCCACTCGTATCCCCAAGATCCAAAAGCTGCTACAGGACTTCTTCAATGGCAAA 1356 Query 196358 GATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCT 196417 || | ||||| | |||||||| ||||| || |||||||| || || || || || || Sbjct 1355 GAGCTCAACAAGAGCATCAACCCCGATGAGGCTGTTGCTTACGGCGCTGCTGTGCAAGCA 1296 Query 196418 GCTATTCTCTCAGGTGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTT 196474 ||||| |||| | | ||||| | | || || || ||||| |||| | ||||| Sbjct 1295 GCTAT--CCTCATG-GGAGACAAGTCTGAGAATGTGCAGGATCTGTTGCTGTTGGATGTC 1239 Query 196475 GCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGG 196534 | || | |||||||| | || ||||| ||||| || |||||| | || | | Sbjct 1238 ACCCCTCTGTCCCTGGGCATCGAGACAGCTGGTGGAGTGATGACTGCTCTCATCAAGCGC 1179 Query 196535 AACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCA 196594 ||||| || ||||| || || | || ||| | || || || || |||||| Sbjct 1178 AACACCACCATTCCCACCAAACAAACTCAGACCTTCACCACCTACTCGGA----CAACCA 1123 Query 196595 G----GTGTTCATATTCAAGTATATGAAG--GAGAACGCTCCCGTG-CAAAGGATAACCA 196647 | | || | | || || || || | |||| ||| || ||||||| ||| | Sbjct 1122 GAGTAGCGTCCTGGTCCAGGTGTACGAGGGTGAGAGGGCT---ATGACAAAGGACAACAA 1066 Query 196648 TCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGAT 196707 | || || | || || | ||||| || || | || ||| | || || || ||||| Sbjct 1065 CTTGCTGGGCAAATTTGACCTAACGGGCATCCCCCCGGCGCCCCGTGGAGTCCCCCAGAT 1006 Query 196708 TAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGC 196767 | | || || || || || || ||||| || || ||||||| || | ||||||| Sbjct 1005 TGAGGTCACTTTTGACATCGATGCCAATGGTATCCTGAACGTCAGTGCCGTGGACAAGAG 946 Query 196768 TTCTGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGA 196827 | || || | ||||| || |||||||||||||| || ||| ||||| || Sbjct 945 CACGGGTAAGGAGAACAAGATCACCATCACCAATGACAAGGGTCGCCTTAGCAAGGATGA 886 Query 196828 AATTGAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGA 196875 ||||| |||||||| ||||| || || || |||| | ||| || || Sbjct 885 CATTGACCGTATGGTGCAAGAAGCAGAGAAATACAAAGCAGAGGATGA 838 Score = 159 bits (176), Expect = 5e-34 Identities = 372/554 (67%), Gaps = 9/554 (2%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || || || ||||| || || || || ||||| || || ||||| | || ||| Sbjct 2617 GCAATCGGCATCGACTTGGGCACCACGTACTCCTGCGTGGGTGTCTTCCAGCATGGCAAA 2558 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| | |||||||| || ||||| || || || || || ||||| || Sbjct 2557 GTGGAGATCATCGCCAATGACCAGGGCAACCGCACCACACCCAGCTATGTGGCCTTCACT 2498 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| || || ||| | || ||||| || || || ||| ||||||||||||| ||| Sbjct 2497 GATACAGAGCGCCTCATCGGTGATGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 2438 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || |||| || || |||||||| ||||| ||||||| | || | || || Sbjct 2437 ACCATCTTCGATGCCAAGCGTCTCATTGGCCGCAAGTATGATGACCCCACGGTGCAGTCT 2378 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCG-GTGTGGCTGATAAGCCTATGATTAA 195597 || || ||| ||||| | | || || || | ||||| ||||| | | | | Sbjct 2377 GACATGAAGCACTGGCCCTTCCGTGTGGTGAACGAGAGTGGC----AAGCCCAAGGTGCA 2322 Query 195598 TGTTGAATTTCACGGTGAGAAGAA-ACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGT 195656 || || | | ||||||| ||| || | | | || || || || || ||||| Sbjct 2321 AGTGGAGTACAAGGGTGAGATGAAGACCTTCTTC-CCAGAGGAGATCAGCTCCATGGTCC 2263 Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 | | ||||||||||||| ||| || ||| |||| | ||| | |||| || Sbjct 2262 TTACCAAGATGAAGGAGATTGCCGAGGCTTATCTGGGGCGCAAGGTGCAGAATGCTGTCA 2203 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776 | || || ||||||||||||| ||| || || || ||||| || || || |||| | | Sbjct 2202 TCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACCA 2143 Query 195777 TTGCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835 | | || || || ||| | | ||||||||||| || ||||| ||||| || || ||| Sbjct 2142 TCACTGGCCTTAA-TGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTATAGCCTAT 2084 Query 195836 GGTCTGGACAAGAA 195849 || |||||||||| Sbjct 2083 GGCTTGGACAAGAA 2070 >seq23937 Length=27876 Score = 206 bits (228), Expect = 3e-48 Identities = 369/539 (68%), Gaps = 0/539 (0%) Strand=Plus/Minus Query 195866 AATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAA 195925 ||||| | |||||||| || || ||||| || |||||||| ||| |||| | ||||||| Sbjct 26426 AATGTTCTTATCTTTGACCTTGGAGGTGGCACCTTTGATGTGTCAATTCTGACTATTGAA 26367 Query 195926 GGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTC 195985 | ||| || || || || || | ||||| ||||| ||||| | ||||| ||||| || Sbjct 26366 GATGGCATCTTTGAGGTGAAATCCACTGCAGGTGACACTCACTTGGGTGGAGAAGACTTT 26307 Query 195986 GATGCACGTCTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATT 196045 || || | || || || || ||| ||| || ||| | |||||||| || Sbjct 26306 GACAACCGCATGGTCAACCACTTCATTGCTGAATTCAAGCGCAAGCACAAGAAAGACATC 26247 Query 196046 TCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACT 196105 || || || || ||||||| || | || ||||| || ||||| || || ||| Sbjct 26246 AGTGAGAACAAGAGAGCAGTTCGTCGCCTCCGCACCGCATGCGAGCGTGCAAAGCGTACT 26187 Query 196106 CTCTCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTC 196165 || ||||||| | || | | |||| |||||||| | | ||| || ||||||||| Sbjct 26186 CTGTCTTCTAGCACGCAGGCCAGTATTGAAATTGATTCTCTCTATGAGGGTATTGACTTC 26127 Query 196166 TATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGT 196225 || ||| | |||||| | || || ||||||||| | ||| |||| |||| | Sbjct 26126 TACACATCCATTACCAGAGCTCGCTTTGAAGAGCTGAACGCTGACCTGTTCCGTGGCACC 26067 Query 196226 ATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAA 196285 |||| ||||| ||| | | || || || || || | || || || || | |||| Sbjct 26066 CTGGATCCTGTGGAAAAGGCCCTGCGGGATGCCAAACTTGACAAATCGCAGATCCATGAC 26007 Query 196286 ATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTC 196345 || || || || || || || || || || || |||||||| | |||| |||| Sbjct 26006 ATCGTGCTGGTTGGTGGGTCTACTCGCATCCCAAAGATTCAGAAACTGCTGCAGGACTTC 25947 Query 196346 TTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGC 196404 |||||| ||||| | ||||| | ||||| || |||||||| || ||||||||||| Sbjct 25946 TTCAATGGCAAAGAACTGAACAAGAGCATCAATCCTGATGAAGCTGTGGCTTATGGTGC 25888 Score = 107 bits (118), Expect = 3e-18 Identities = 110/141 (78%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 195710 GCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCT 195769 || || ||||||||||| || || |||| ||| || ||||| ||||| || || || ||| Sbjct 26684 GCTGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAACGTCAGGCTACTAAAGATGCT 26625 Query 195770 GCTGCTATTGCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAAT 195828 | | ||||| || || || ||| || |||||||||| || |||||||| ||||| || Sbjct 26624 GGAACCATTGCAGGGCTCAA-TGTACTGCGAATTATCAACGAGCCAACAGCTGCTGCGAT 26566 Query 195829 TGCTTATGGTCTGGACAAGAA 195849 || |||||||||||||| || Sbjct 26565 AGCCTATGGTCTGGACAAAAA 26545 Score = 91.5 bits (100), Expect = 2e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 196607 CAAGTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGA 196665 || ||||||||||||||||| | | || | ||||| ||| | | || || | || || Sbjct 25020 CAGGTATATGAAGGAGAACG-TGCTATGACTAAGGACAACAACTTGCTGGGCAAGTTTGA 24962 Query 196666 TTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATAT 196725 |||| || ||||| |||| |||||||| || || |||||| | || ||| ||||| Sbjct 24961 GCTGACTGGTATTCCCCCTGCTCCCAGAGGCGTACCTCAGATTGAAGTAACCTTTGATAT 24902 Query 196726 AGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAA 196785 || || ||||| || || || || | |||| ||| ||| ||||||| | || Sbjct 24901 TGATGCCAATGGCATCCTGAATGTGTCTGCTGTGGATAAGAGCACTGGCAAGGAGAACAA 24842 Query 196786 GATTGTGATTACCAATGACAAGGG 196809 ||| ||| || ||||||||||| Sbjct 24841 GATCACGATAACAAATGACAAGGG 24818 >seq7285 Length=7271 Score = 122 bits (134), Expect = 1e-22 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 196637 AAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGT 196696 |||||||| ||||| || |||||||| ||| |||| || || || |||| || | ||| Sbjct 4360 AAGGATAATCATCTTCTGGGAACTTTTGATCTGACTGGAATCCCTCCTGCCCCTCGTGGT 4301 Query 196697 GTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCT 196756 || || |||||| | ||| ||| || ||||| | |||||||| || ||||||||| Sbjct 4300 GTCCCCCAGATTGAAGTTACCTTTGAAATAGATGTGAATGGAATCCTGCGTGTCACAGCT 4241 Query 196757 GAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTT 196816 || ||||||| |||| || | ||||| ||||| |||||| || ||||| Sbjct 4240 GAAGACAAGGGCACTGGGAACAAAAACAAGATCACAATTACAAATGACCAGAATCGGCTG 4181 Query 196817 TCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAG 196876 | ||| |||||||| | |||||| | ||||| || |||| ||| |||||| || Sbjct 4180 ACACCGGAAGAAATTGAGAGGATGGTTAACGATGCTGAGAAGTTTGCGGAGGAAGACAAG 4121 >seq40145 Length=14051 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||||||||| || |||||||| ||||| |||||||||||||| ||||| ||||||||||| Sbjct 396 AGGCATTCCTCCTGATCAGCAGCGACTGATTTTTGCTGGTAAGCAGCTAGAAGATGGACG 455 Query 172023 TACCCTCGCTGATTACAACGTTCAAAA 172049 || || |||| ||||| ||||||| Sbjct 456 CACGCTGTCTGACTACAATATTCAAAA 482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657353946374320