Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13]
61,831 sequences; 1,129,694,867 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq33410 176 5e-38
seq2751 147 3e-29
seq15108 125 9e-23
seq28407 111 2e-18
>seq33410
Length=1362
Score = 176 bits (194), Expect = 5e-38
Identities = 160/202 (79%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| | ||
Sbjct 877 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 936
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || ||||||| ||||||| |||| |
Sbjct 937 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCCGCGATGCGCTCGAAGA 996
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 997 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 1056
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 1057 GCACCTGCTTCAGCACCTTGTA 1078
>seq2751
Length=30050
Score = 147 bits (162), Expect = 3e-29
Identities = 155/204 (76%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || || | | | |||||||||||| ||||| ||||| |||| | ||
Sbjct 14860 GCTTGGCCAGCTCTCCTGGGAGCAGCAGGCGCACGGCTGTCTGAATCTCCCGCGAGGTGA 14919
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| | || ||||| ||| ||| || ||||||| || | |
Sbjct 14920 TGGTGGAGCGCTTGTTGTAATGGGCCAGGCGGGAGGCTTCTCCAGCGATGCGCTCAAAGA 14979
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
||||||||||||| |||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 14980 TGTCGTTGACAAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 15039
Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546
| |||||||| |||||||||||||
Sbjct 15040 GGACCTGCTTCAGCACCTTGTAGA 15063
>seq15108
Length=1589
Score = 125 bits (138), Expect = 9e-23
Identities = 114/144 (79%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 1254401 GATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGAT 1254460
||| ||| ||||||||| |||||||||| || ||||||| ||||||| ||||
Sbjct 1255 GATGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCCGCGATGCGCTCGAA 1196
Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520
||||||||||| || |||||||||| ||| | |||| ||||||||| ||||||
Sbjct 1195 GATGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGG 1136
Query 1254521 GTGCACCTGCTTGAGCACCTTGTA 1254544
|||||||||||| |||||||||||
Sbjct 1135 GTGCACCTGCTTCAGCACCTTGTA 1112
>seq28407
Length=1888
Score = 111 bits (122), Expect = 2e-18
Identities = 147/203 (72%), Gaps = 17/203 (8%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCG-GTCTGGATCTCGCGCGTGCCG 1254401
|| ||||||| |||||| ||| | ||| || ||| | ||||||||||| |||| | |
Sbjct 494 GCTTGGCCAGCTCGCCGGGCAGCAGCAG-CGGACGTCTCGTCTGGATCTCCCGCGAGGGG 436
Query 1254402 ATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATC 1254461
|| || | |||||||| || ||||||| ||||||| ||||
Sbjct 435 AT------------GT---ATTGCGCCAGGCGCGAGGCCTCGCCCGCGATGCGCTCGAAG 391
Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521
||||||||||| || |||||||||| ||| | |||| ||||||||| |||||||
Sbjct 390 ATGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGG 331
Query 1254522 TGCACCTGCTTGAGCACCTTGTA 1254544
||||||||||| |||||||||||
Sbjct 330 TGCACCTGCTTCAGCACCTTGTA 308
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6102065058585427
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |