Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13] 61,831 sequences; 1,129,694,867 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq33410 176 5e-38 seq2751 147 3e-29 seq15108 125 9e-23 seq28407 111 2e-18 >seq33410 Length=1362 Score = 176 bits (194), Expect = 5e-38 Identities = 160/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| | || Sbjct 877 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 936 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| ||||||| |||| | Sbjct 937 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCCGCGATGCGCTCGAAGA 996 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 997 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 1056 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 1057 GCACCTGCTTCAGCACCTTGTA 1078 >seq2751 Length=30050 Score = 147 bits (162), Expect = 3e-29 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | | |||||||||||| ||||| ||||| |||| | || Sbjct 14860 GCTTGGCCAGCTCTCCTGGGAGCAGCAGGCGCACGGCTGTCTGAATCTCCCGCGAGGTGA 14919 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || ||||| ||| ||| || ||||||| || | | Sbjct 14920 TGGTGGAGCGCTTGTTGTAATGGGCCAGGCGGGAGGCTTCTCCAGCGATGCGCTCAAAGA 14979 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 14980 TGTCGTTGACAAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 15039 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 15040 GGACCTGCTTCAGCACCTTGTAGA 15063 >seq15108 Length=1589 Score = 125 bits (138), Expect = 9e-23 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 1254401 GATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGAT 1254460 ||| ||| ||||||||| |||||||||| || ||||||| ||||||| |||| Sbjct 1255 GATGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCCGCGATGCGCTCGAA 1196 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520 ||||||||||| || |||||||||| ||| | |||| ||||||||| |||||| Sbjct 1195 GATGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGG 1136 Query 1254521 GTGCACCTGCTTGAGCACCTTGTA 1254544 |||||||||||| ||||||||||| Sbjct 1135 GTGCACCTGCTTCAGCACCTTGTA 1112 >seq28407 Length=1888 Score = 111 bits (122), Expect = 2e-18 Identities = 147/203 (72%), Gaps = 17/203 (8%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCG-GTCTGGATCTCGCGCGTGCCG 1254401 || ||||||| |||||| ||| | ||| || ||| | ||||||||||| |||| | | Sbjct 494 GCTTGGCCAGCTCGCCGGGCAGCAGCAG-CGGACGTCTCGTCTGGATCTCCCGCGAGGGG 436 Query 1254402 ATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATC 1254461 || || | |||||||| || ||||||| ||||||| |||| Sbjct 435 AT------------GT---ATTGCGCCAGGCGCGAGGCCTCGCCCGCGATGCGCTCGAAG 391 Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 ||||||||||| || |||||||||| ||| | |||| ||||||||| ||||||| Sbjct 390 ATGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGG 331 Query 1254522 TGCACCTGCTTGAGCACCTTGTA 1254544 ||||||||||| ||||||||||| Sbjct 330 TGCACCTGCTTCAGCACCTTGTA 308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6102065058585427