Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13] 61,831 sequences; 1,129,694,867 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq33410 228 1e-53 seq2751 201 2e-45 seq28407 172 9e-37 seq15108 125 1e-22 seq25804 96.9 5e-14 >seq33410 Length=1362 Score = 228 bits (252), Expect = 1e-53 Identities = 204/256 (80%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 838 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 897 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 898 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 957 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| ||||||| |||| ||||||||||| || ||||||| Sbjct 958 GCGCCAGGCGCGAGGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 1017 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 1018 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 1077 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 1078 ACACGTAGATCGAGTA 1093 >seq2751 Length=30050 Score = 201 bits (222), Expect = 2e-45 Identities = 191/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| |||||||||||||||||| ||||||| || || | | Sbjct 14821 TGTACTTGGTGACGGCCTTGGTGCCCTCTGAGACGGCGTGCTTGGCCAGCTCTCCTGGGA 14880 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||| ||||| || | | ||| ||| ||||||||| Sbjct 14881 GCAGCAGGCGCACGGCTGTCTGAATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAAT 14940 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||| || ||||||| || | |||||||||||||| ||||||| Sbjct 14941 GGGCCAGGCGGGAGGCTTCTCCAGCGATGCGCTCAAAGATGTCGTTGACAAAGGAGTTCA 15000 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||| |||||||| |||||||||| Sbjct 15001 TGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGGACCTGCTTCAGCACCTTGT 15060 Query 1485710 AAAC 1485713 | || Sbjct 15061 AGAC 15064 >seq28407 Length=1888 Score = 172 bits (190), Expect = 9e-37 Identities = 193/257 (75%), Gaps = 17/257 (7%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 533 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 474 Query 1485530 TGATCAGGCGCACGGC-GGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG 1485588 | || ||| ||| | ||||||||||| || | | ||| || || Sbjct 473 GCAGCA-GCGGACGTCTCGTCTGGATCTCCCGCGAGGGGAT-GTATT------------- 429 Query 1485589 CGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 |||||||||| ||||||| ||||||| |||| ||||||||||| || |||||| Sbjct 428 -GCGCCAGGCGCGAGGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTC 370 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||| | ||| ||||||||| |||||||||||||||||| ||||||||| Sbjct 369 ATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTG 310 Query 1485709 TAAACAAAGGACGAGTA 1485725 || || || |||||| Sbjct 309 TACACGTAGATCGAGTA 293 >seq15108 Length=1589 Score = 125 bits (138), Expect = 1e-22 Identities = 123/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 1485567 GATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGAT 1485626 ||| ||| ||||||||| | |||||||||| ||||||| ||||||| |||| Sbjct 1255 GATGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCCGCGATGCGCTCGAA 1196 Query 1485627 CATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGG 1485686 ||||||||||| || ||||||||||| ||| | ||| ||||||||| |||||| Sbjct 1195 GATGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGG 1136 Query 1485687 GTGCACCTGCTTGAGCACCTTGTAAACAAAGGACGAGTA 1485725 |||||||||||| ||||||||||| || || |||||| Sbjct 1135 GTGCACCTGCTTCAGCACCTTGTACACGTAGATCGAGTA 1097 >seq25804 Length=1697 Score = 96.9 bits (106), Expect = 5e-14 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 1128 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 1187 Query 1485530 TGATCAGGCGCACGGCGGTCTGG 1485552 | ||| ||||| || |||||| Sbjct 1188 GCAGCAGCCGCACCGCCGTCTGG 1210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7909669154518809