Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13] 61,831 sequences; 1,129,694,867 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq23937 118 8e-21 seq31781 102 6e-16 >seq23937 Length=27876 Score = 118 bits (130), Expect = 8e-21 Identities = 363/554 (66%), Gaps = 18/554 (3%) Strand=Plus/Plus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 |||||||| || ||||||||||||||||| | | | || |||| ||| |||||||| Sbjct 25888 GCACCATAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAGTTCTTTGCCATTGAAG 25947 Query 281837 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 || | || |||| ||| | ||| || || |||| || || ||||| | || || Sbjct 25948 AAGTCCTGCAGCAGTT-TCTGAATCTTTGGGATGCGAGTAGACCCACCAACCAGCACGAT 26006 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 ||||| | ||| ||||| || ||||| | |||| | | ||||| || || || || Sbjct 26007 GTCATGGATCTGCGATTTGTCAAGTTTGGCATCCCGCAGGGCCTTTTCCACAGGATCCAG 26066 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GA-GTGAC 282012 | | |||| ||| | || ||||| || |||||| |||| || ||| Sbjct 26067 GGTGCCACGGAACAGGTCAGCGTTCAGCTCTTCAAAGCGAGCTCTGGTAATGGATGTG-- 26124 Query 282013 ATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAG 282071 || || ||||| || || | | |||||||| |||||| | | || || ||||| Sbjct 26125 --TAGAAGTCAATACCCTCATAGAGAGAATCAATTTCAATACTGGCCTGCGTGCTAGAAG 26182 Query 282072 ATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG----CTTTTGCT 282127 | || | ||| || ||||| || ||||| || | || | || | | ||| | || Sbjct 26183 ACAGAGTACGCTTTGCACGCTCGCATGCGGTGCGGAGGCGACGAACTGCTCTCTTGTTCT 26242 Query 282128 GATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGA 282187 | |||| ||| | || | || | |||||| || ||| | | || | Sbjct 26243 CACTGAT----GTCTTTCTTGTGCTTGCGCTTGAATTCAGCAATGAAGTGGTTGACCATG 26298 Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 || || ||||| ||||| || ||||| | ||| | |||| || | | | || | || Sbjct 26299 CGGTTGTCAAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAG 26358 Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307 | |||||||||| || || || | |||||| ||| ||||| || | ||||| ||| Sbjct 26359 ATGCCATCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAGATA 26418 Query 282308 AGTACATTCATTTC 282321 || |||||| |||| Sbjct 26419 AGAACATTCCTTTC 26432 Score = 102 bits (112), Expect = 6e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || |||||||| || | |||||||| ||||| || || ||||||| || ||| Sbjct 26545 TTTTTGTCCAGACCATAGGCTATCGCAGCAGCTGTTGGCTCGTTGATAATTCGCAGTACA 26604 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || || ||||| |||| ||||||||||| || || | ||| || || || ||||| Sbjct 26605 TTGAGCCCTGCAATGGTTCCAGCATCTTTAGTAGCCTGACGTTGAGAGTCATTGAAATAG 26664 Query 282452 GCAGGAACAGT 282462 || || ||||| Sbjct 26665 GCTGGTACAGT 26675 Score = 100 bits (110), Expect = 2e-15 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||||| |||||||||||||| | |||| |||| | || || ||||| || |||| Sbjct 27532 CAAAAACTGTATTGGTTGGATTCATTGCAACTTGGTTCTTTGCAGCATCGCCGATCAACC 27591 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||||| ||||| || | ||| || || || || || ||||| || ||||| |||| Sbjct 27592 TCTCTGTATCTGTGAAGGCAACGTAGCTCGGTGTGGTCCGGTTACCCTGGTCATTAGCAA 27651 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||| || || |||| || ||||||| ||||| | | || || || | ||||| Sbjct 27652 TGATTTCCACCTTCCCATGCTGGAATACACCAACACAGGAATAGGTGGTGCCAAGATCAA 27711 Query 282870 TACCAATAGC 282879 | || | ||| Sbjct 27712 TTCCGACAGC 27721 >seq31781 Length=47885 Score = 102 bits (112), Expect = 6e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| || || ||| | |||||||| ||||| || |||||| | ||| | | | ||||| Sbjct 22150 TGTTGTGGCTACAGTGGCATTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 22091 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 ||||||||| || || ||| | || ||| ||||||||||||||||| ||||| ||||| Sbjct 22090 TCATTACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCG 22031 Query 131296 TGATGG 131301 ||||| Sbjct 22030 CGATGG 22025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3737594759197806