Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13]
61,831 sequences; 1,129,694,867 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq23937 118 8e-21
seq31781 102 6e-16
>seq23937
Length=27876
Score = 118 bits (130), Expect = 8e-21
Identities = 363/554 (66%), Gaps = 18/554 (3%)
Strand=Plus/Plus
Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836
|||||||| || ||||||||||||||||| | | | || |||| ||| ||||||||
Sbjct 25888 GCACCATAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAGTTCTTTGCCATTGAAG 25947
Query 281837 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895
|| | || |||| ||| | ||| || || |||| || || ||||| | || ||
Sbjct 25948 AAGTCCTGCAGCAGTT-TCTGAATCTTTGGGATGCGAGTAGACCCACCAACCAGCACGAT 26006
Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955
||||| | ||| ||||| || ||||| | |||| | | ||||| || || || ||
Sbjct 26007 GTCATGGATCTGCGATTTGTCAAGTTTGGCATCCCGCAGGGCCTTTTCCACAGGATCCAG 26066
Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GA-GTGAC 282012
| | |||| ||| | || ||||| || |||||| |||| || |||
Sbjct 26067 GGTGCCACGGAACAGGTCAGCGTTCAGCTCTTCAAAGCGAGCTCTGGTAATGGATGTG-- 26124
Query 282013 ATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAG 282071
|| || ||||| || || | | |||||||| |||||| | | || || |||||
Sbjct 26125 --TAGAAGTCAATACCCTCATAGAGAGAATCAATTTCAATACTGGCCTGCGTGCTAGAAG 26182
Query 282072 ATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG----CTTTTGCT 282127
| || | ||| || ||||| || ||||| || | || | || | | ||| | ||
Sbjct 26183 ACAGAGTACGCTTTGCACGCTCGCATGCGGTGCGGAGGCGACGAACTGCTCTCTTGTTCT 26242
Query 282128 GATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGA 282187
| |||| ||| | || | || | |||||| || ||| | | || |
Sbjct 26243 CACTGAT----GTCTTTCTTGTGCTTGCGCTTGAATTCAGCAATGAAGTGGTTGACCATG 26298
Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247
|| || ||||| ||||| || ||||| | ||| | |||| || | | | || | ||
Sbjct 26299 CGGTTGTCAAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAG 26358
Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307
| |||||||||| || || || | |||||| ||| ||||| || | ||||| |||
Sbjct 26359 ATGCCATCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAGATA 26418
Query 282308 AGTACATTCATTTC 282321
|| |||||| ||||
Sbjct 26419 AGAACATTCCTTTC 26432
Score = 102 bits (112), Expect = 6e-16
Identities = 101/131 (77%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
||||| || |||||||| || | |||||||| ||||| || || ||||||| || |||
Sbjct 26545 TTTTTGTCCAGACCATAGGCTATCGCAGCAGCTGTTGGCTCGTTGATAATTCGCAGTACA 26604
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| || || ||||| |||| ||||||||||| || || | ||| || || || |||||
Sbjct 26605 TTGAGCCCTGCAATGGTTCCAGCATCTTTAGTAGCCTGACGTTGAGAGTCATTGAAATAG 26664
Query 282452 GCAGGAACAGT 282462
|| || |||||
Sbjct 26665 GCTGGTACAGT 26675
Score = 100 bits (110), Expect = 2e-15
Identities = 136/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749
|||||| |||||||||||||| | |||| |||| | || || ||||| || ||||
Sbjct 27532 CAAAAACTGTATTGGTTGGATTCATTGCAACTTGGTTCTTTGCAGCATCGCCGATCAACC 27591
Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809
||||| ||||| || | ||| || || || || || ||||| || ||||| ||||
Sbjct 27592 TCTCTGTATCTGTGAAGGCAACGTAGCTCGGTGTGGTCCGGTTACCCTGGTCATTAGCAA 27651
Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869
| ||||| || || |||| || ||||||| ||||| | | || || || | |||||
Sbjct 27652 TGATTTCCACCTTCCCATGCTGGAATACACCAACACAGGAATAGGTGGTGCCAAGATCAA 27711
Query 282870 TACCAATAGC 282879
| || | |||
Sbjct 27712 TTCCGACAGC 27721
>seq31781
Length=47885
Score = 102 bits (112), Expect = 6e-16
Identities = 98/126 (78%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235
||| || || ||| | |||||||| ||||| || |||||| | ||| | | | |||||
Sbjct 22150 TGTTGTGGCTACAGTGGCATTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 22091
Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295
||||||||| || || ||| | || ||| ||||||||||||||||| ||||| |||||
Sbjct 22090 TCATTACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCG 22031
Query 131296 TGATGG 131301
|||||
Sbjct 22030 CGATGG 22025
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3737594759197806
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |