Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13] 61,831 sequences; 1,129,694,867 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq8994 149 7e-31 >seq8994 Length=37908 Score = 149 bits (164), Expect = 7e-31 Identities = 571/886 (64%), Gaps = 27/886 (3%) Strand=Plus/Plus Query 162121 TCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGAT 162180 || ||||| || || || | ||| || |||| | ||||| || || || ||| Sbjct 26416 TCAAACTTATTAGCAAAGAAGTGGTG---GTTCCGTAGCATCCAGTTCAGGTCTCCCACC 26472 Query 162181 CCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCG 162240 || || || ||||| || || || || || || ||||| || || || | || || | | Sbjct 26473 CCAAAAACACACACAGAGCGAACATGAACTCCACTGCATGGTGGGTAGGGTGCACCTTTG 26532 Query 162241 TCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAG 162300 || || || || |||| |||||||| || ||||| | | || | |||||| || Sbjct 26533 GACATGTCACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGAA 26592 Query 162301 GTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGT 162359 ||| ||||||| |||| || | || || || || || | || | |||||| | || Sbjct 26593 ACGTCATACTTGT-CACTAGAAGAAACTGCACCCGGGACTTCAGGGATTCTCTGAATTGT 26651 Query 162360 AGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGAC 162419 |||||||||| || ||||| ||||| || || || | |||||| ||||||| | | Sbjct 26652 GGCCCACAGGTACTCATCTGGGCTATAAGTGTCTTTTGCCCACTCAATGAACT---TAAG 26708 Query 162420 CGTTTTATCG---TATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCT 162476 |||| | | || | ||| || | ||| | || | ||| || || || Sbjct 26709 TATTTTGCTGCTTTCTAATACGTATTCTACAAATCTTCTGCTAACTACAAAATAGGCACT 26768 Query 162477 ACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTAC 162536 ||||||||| | || | | | ||| || | | ||||||| || ||||| || Sbjct 26769 ACCAGAAAAAATTGGAGTACTAAGAGGTGGTAGTTGTTTGTCTATGCCTGTGTTCTTTAT 26828 Query 162537 CATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG-- 162594 | || || | || | | || || ||||||| | ||| || || || Sbjct 26829 TTTACCATCAATGATCTCATGGTGTTTTTTCCACCTTACTTCTTTA----TAAACAGGCA 26884 Query 162595 --TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTA 162652 | ||| || || | ||||| ||| | ||| || | | || || || Sbjct 26885 TTTTTTCTGTTTCCAAGCTGTTTTCACCTTTAAGGGCTTTTAATTTCTCTACTATTTCCT 26944 Query 162653 GATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGC 162712 | |||||||| | |||||||| |||| ||||| || || | |||||||| || | Sbjct 26945 GGTTGGTCTTTATAGGAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGTTTGAAC 27004 Query 162713 TGAGTCCGTACAGATCCTGT-AGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCG 162771 | || ||| ||||| ||| | ||||| | || ||||| || | ||||| || || Sbjct 27005 TTCTTCTGTAGAGATC-TGTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCA 27063 Query 162772 TACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCC 162831 || || || ||||||||| ||| | |||||| || || ||||| || ||||| ||| Sbjct 27064 TATACAACACTCTCCAACTGGCTGGAAATAAAGACGTTATCAAAACATGAGACTATTCCC 27123 Query 162832 ATCACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGA 162888 |||| || || | || | || || ||| | || || || | |||||| | | Sbjct 27124 TTCACAGC-AGCAAAAAAAGATTCTGGAGACTTTT--TGTCAACATGAATGCAGTAAAAA 27180 Query 162889 TTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACC 162948 ||||||||||| ||||| | || || | ||| || | |||||| || || || | ||| Sbjct 27181 TTCTGAGGGGCATAGATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACC 27240 Query 162949 ACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 || || || || || || || || || || || || ||||||| Sbjct 27241 ACTATTGAGTAAGCAATTGGAAATTCTGCTTCTTCATTGCTGAGAG 27286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577984937137600