Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13]
61,831 sequences; 1,129,694,867 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq8994 149 7e-31
>seq8994
Length=37908
Score = 149 bits (164), Expect = 7e-31
Identities = 571/886 (64%), Gaps = 27/886 (3%)
Strand=Plus/Plus
Query 162121 TCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGAT 162180
|| ||||| || || || | ||| || |||| | ||||| || || || |||
Sbjct 26416 TCAAACTTATTAGCAAAGAAGTGGTG---GTTCCGTAGCATCCAGTTCAGGTCTCCCACC 26472
Query 162181 CCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCG 162240
|| || || ||||| || || || || || || ||||| || || || | || || | |
Sbjct 26473 CCAAAAACACACACAGAGCGAACATGAACTCCACTGCATGGTGGGTAGGGTGCACCTTTG 26532
Query 162241 TCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAG 162300
|| || || || |||| |||||||| || ||||| | | || | |||||| ||
Sbjct 26533 GACATGTCACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGAA 26592
Query 162301 GTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGT 162359
||| ||||||| |||| || | || || || || || | || | |||||| | ||
Sbjct 26593 ACGTCATACTTGT-CACTAGAAGAAACTGCACCCGGGACTTCAGGGATTCTCTGAATTGT 26651
Query 162360 AGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGAC 162419
|||||||||| || ||||| ||||| || || || | |||||| ||||||| | |
Sbjct 26652 GGCCCACAGGTACTCATCTGGGCTATAAGTGTCTTTTGCCCACTCAATGAACT---TAAG 26708
Query 162420 CGTTTTATCG---TATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCT 162476
|||| | | || | ||| || | ||| | || | ||| || || ||
Sbjct 26709 TATTTTGCTGCTTTCTAATACGTATTCTACAAATCTTCTGCTAACTACAAAATAGGCACT 26768
Query 162477 ACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTAC 162536
||||||||| | || | | | ||| || | | ||||||| || ||||| ||
Sbjct 26769 ACCAGAAAAAATTGGAGTACTAAGAGGTGGTAGTTGTTTGTCTATGCCTGTGTTCTTTAT 26828
Query 162537 CATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG-- 162594
| || || | || | | || || ||||||| | ||| || || ||
Sbjct 26829 TTTACCATCAATGATCTCATGGTGTTTTTTCCACCTTACTTCTTTA----TAAACAGGCA 26884
Query 162595 --TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTA 162652
| ||| || || | ||||| ||| | ||| || | | || || ||
Sbjct 26885 TTTTTTCTGTTTCCAAGCTGTTTTCACCTTTAAGGGCTTTTAATTTCTCTACTATTTCCT 26944
Query 162653 GATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGC 162712
| |||||||| | |||||||| |||| ||||| || || | |||||||| || |
Sbjct 26945 GGTTGGTCTTTATAGGAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGTTTGAAC 27004
Query 162713 TGAGTCCGTACAGATCCTGT-AGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCG 162771
| || ||| ||||| ||| | ||||| | || ||||| || | ||||| || ||
Sbjct 27005 TTCTTCTGTAGAGATC-TGTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCA 27063
Query 162772 TACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCC 162831
|| || || ||||||||| ||| | |||||| || || ||||| || ||||| |||
Sbjct 27064 TATACAACACTCTCCAACTGGCTGGAAATAAAGACGTTATCAAAACATGAGACTATTCCC 27123
Query 162832 ATCACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGA 162888
|||| || || | || | || || ||| | || || || | |||||| | |
Sbjct 27124 TTCACAGC-AGCAAAAAAAGATTCTGGAGACTTTT--TGTCAACATGAATGCAGTAAAAA 27180
Query 162889 TTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACC 162948
||||||||||| ||||| | || || | ||| || | |||||| || || || | |||
Sbjct 27181 TTCTGAGGGGCATAGATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACC 27240
Query 162949 ACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994
|| || || || || || || || || || || || |||||||
Sbjct 27241 ACTATTGAGTAAGCAATTGGAAATTCTGCTTCTTCATTGCTGAGAG 27286
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577984937137600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |