Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13] 61,831 sequences; 1,129,694,867 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq8137 87.8 4e-12 seq32411 86.0 1e-11 >seq8137 Length=98436 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 131858 AGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATC 131917 ||| | || || |||||| |||||||| || |||||||| ||| | || |||||| Sbjct 11064 AGAGTGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATA 11123 Query 131918 TTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCG 131977 |||||||| |||||| | || ||||||||||||| | || |||||| || | || Sbjct 11124 TTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGC 11183 Query 131978 AGAGATGA 131985 |||||||| Sbjct 11184 AGAGATGA 11191 >seq32411 Length=23632 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 131864 GTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGG 131923 ||||||||||| || ||||| || ||||||||||| |||| | || |||||| Sbjct 20819 GTAGCTTTTGCAGCAGTGGAAGGGATCTTCTTTTCAGGCTCTTTTGCATCAATTTTTTGG 20760 Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983 || ||||| | ||||| |||||||||||| | || || ||| || ||||| |||||| Sbjct 20759 CTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAACTCATCAGTAGAGAT 20700 Query 131984 GA 131985 || Sbjct 20699 GA 20698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185872595402591