Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13]
61,831 sequences; 1,129,694,867 total letters
Query= NC_026141.2
Length=4988
Score E
Sequences producing significant alignments: (Bits) Value
seq37894 118 3e-23
seq3402 114 4e-22
seq13803 105 2e-19
seq4052 98.7 3e-17
seq18895 91.5 5e-15
>seq37894
Length=24394
Score = 118 bits (130), Expect = 3e-23
Identities = 70/73 (96%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 4379 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAA 4320
Query 2828 CCCGGGCTTCAGC 2840
|||||||||||||
Sbjct 4319 CCCGGGCTTCAGC 4307
>seq3402
Length=13779
Score = 114 bits (126), Expect = 4e-22
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 11706 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAA 11765
Query 2828 CCCGGGCTTCAGC 2840
||||||| |||||
Sbjct 11766 CCCGGGCATCAGC 11778
>seq13803
Length=14933
Score = 105 bits (116), Expect = 2e-19
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
|||| | ||||| ||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 10708 GGCTAATGTAGCCCAGCTGGGAGAGCATTAGACTGAAGACCTAAAGGTCCCTGGTTCAAC 10649
Query 2828 CCCGGGCTTCAGC 2840
||| |||||||||
Sbjct 10648 CCCAGGCTTCAGC 10636
>seq4052
Length=22592
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 12159 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 12218
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 12219 CCGGGTTTCGGC 12230
>seq18895
Length=14373
Score = 91.5 bits (100), Expect = 5e-15
Identities = 52/53 (98%), Gaps = 0/53 (0%)
Strand=Plus/Minus
Query 2788 GAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCTTCAGC 2840
|||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5316 GAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCTTCAGC 5264
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15838881286995
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |