Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13] 61,831 sequences; 1,129,694,867 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq37894 118 3e-23 seq3402 114 4e-22 seq13803 105 2e-19 seq4052 98.7 3e-17 seq18895 91.5 5e-15 >seq37894 Length=24394 Score = 118 bits (130), Expect = 3e-23 Identities = 70/73 (96%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 4379 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAA 4320 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 4319 CCCGGGCTTCAGC 4307 >seq3402 Length=13779 Score = 114 bits (126), Expect = 4e-22 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 11706 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAA 11765 Query 2828 CCCGGGCTTCAGC 2840 ||||||| ||||| Sbjct 11766 CCCGGGCATCAGC 11778 >seq13803 Length=14933 Score = 105 bits (116), Expect = 2e-19 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||| | ||||| ||| |||||||||||||||||||||| |||||||||||||||||||| Sbjct 10708 GGCTAATGTAGCCCAGCTGGGAGAGCATTAGACTGAAGACCTAAAGGTCCCTGGTTCAAC 10649 Query 2828 CCCGGGCTTCAGC 2840 ||| ||||||||| Sbjct 10648 CCCAGGCTTCAGC 10636 >seq4052 Length=22592 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 12159 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 12218 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 12219 CCGGGTTTCGGC 12230 >seq18895 Length=14373 Score = 91.5 bits (100), Expect = 5e-15 Identities = 52/53 (98%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 2788 GAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCTTCAGC 2840 |||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5316 GAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCTTCAGC 5264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15838881286995