Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13]
61,831 sequences; 1,129,694,867 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq33410 197 2e-44
seq2751 165 1e-34
seq28407 134 2e-25
seq15108 109 8e-18
>seq33410
Length=1362
Score = 197 bits (218), Expect = 2e-44
Identities = 182/229 (79%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| || |||| |||||
Sbjct 1078 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 1025
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || ||||||||||| |||| ||||||| ||||||| |||
Sbjct 1024 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCCTCGCGC 965
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| ||| ||| | |||| ||||||||||| ||||||||
Sbjct 964 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 905
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| |||||| ||||||| |||||||||||||||||||||||
Sbjct 904 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 856
>seq2751
Length=30050
Score = 165 bits (182), Expect = 1e-34
Identities = 176/231 (76%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971
||||||||||||| |||||||| |||||| |||| |||| ||| |||| |||
Sbjct 15063 TCTACAAGGTGCTGAAGCAGGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 15010
Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031
|| ||||||||||| |||||||||||||| | || ||||||| || ||| |
Sbjct 15009 TGGGCATCATGAACTCCTTTGTCAACGACATCTTTGAGCGCATCGCTGGAGAAGCCTCCC 14950
Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091
||||||| | | |||||||||| ||| ||| | |||| ||||| ||||| |||||||
Sbjct 14949 GCCTGGCCCATTACAACAAGCGCTCCACCATCACCTCGCGGGAGATTCAGACAGCCGTGC 14890
Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||||| | | | || || ||||||| |||||||||||| ||||||||||
Sbjct 14889 GCCTGCTGCTCCCAGGAGAGCTGGCCAAGCACGCCGTCTCAGAGGGCACCA 14839
>seq28407
Length=1888
Score = 134 bits (148), Expect = 2e-25
Identities = 169/230 (73%), Gaps = 23/230 (10%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| || |||| |||||
Sbjct 308 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 361
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || ||||||||||| |||| ||||||| ||||||| |||
Sbjct 362 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCCTCGCGC 421
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC-GCCGTGCG 725092
||||||| || || ||| | |||| ||||||||||| | ||| ||
Sbjct 422 CTGGCGC--------------AATAC-ATCCCCTCGCGGGAGATCCAGACGAGACGTCCG 466
Query 725093 CCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
| || | ||| |||||| ||||||| |||||||||||||||||||||||
Sbjct 467 C-TGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 515
>seq15108
Length=1589
Score = 109 bits (120), Expect = 8e-18
Identities = 115/150 (77%), Gaps = 6/150 (4%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| || |||| |||||
Sbjct 1112 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 1165
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || ||||||||||| |||| ||||||| ||||||| |||
Sbjct 1166 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCCTCGCGC 1225
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATC 725063
||||||| || |||||||||| ||| |||
Sbjct 1226 CTGGCGCACTACAACAAGCGCTCCACCATC 1255
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7171847486404622
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |