Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13]
61,831 sequences; 1,129,694,867 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq32411 114 1e-20
seq44559 98.7 8e-16
>seq32411
Length=23632
Score = 114 bits (126), Expect = 1e-20
Identities = 90/108 (83%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972
|||||||| ||| | ||||||| || ||||| ||||| || || |||||||| ||||||
Sbjct 22934 CAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAT 22875
Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
|| ||||| ||||||||||||||||| || || || ||||| ||||||
Sbjct 22874 ATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACATTAAAGAT 22827
Score = 102 bits (112), Expect = 6e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182
|||||||| | || || ||||||| |||||||| || ||||||||||| || |||||
Sbjct 20831 GGAGAACGCGTAGTAGCTTTTGCAGCAGTGGAAGGGATCTTCTTTTCAGGCTCTTTTGCA 20772
Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242
| || |||||| | |||||| |||| || |||||||| | || ||||| ||||| |
Sbjct 20771 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAACTC 20712
Query 44243 ATAAGTCGTGATGA 44256
|| ||| | |||||
Sbjct 20711 ATCAGTAGAGATGA 20698
>seq44559
Length=13795
Score = 98.7 bits (108), Expect = 8e-16
Identities = 116/157 (74%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106
||||||| ||||| || || ||| | || ||||| || || ||||||||| |||
Sbjct 8709 TGATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTCCTAAATGGTGAATTGT 8650
Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166
| || ||| | ||||| || || || || ||||||||||| || || || || || || |
Sbjct 8649 CTTGCCAACTCTATCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCA 8590
Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203
| ||| | |||||||| || |||||||| || || ||
Sbjct 8589 GCTATTCACTGCTCACATACATGATTGCCCATGTCAC 8553
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397156490945155
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |