Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13] 61,831 sequences; 1,129,694,867 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq23937 208 2e-48 seq23118 178 4e-39 seq49351 114 4e-20 seq7285 96.9 1e-14 seq32411 93.3 1e-13 seq40145 89.7 2e-12 >seq23937 Length=27876 Score = 208 bits (230), Expect = 2e-48 Identities = 380/549 (69%), Gaps = 8/549 (1%) Strand=Plus/Minus Query 349760 GaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACA 349819 |||| ||| ||||||| ||||| | || ||||| || |||||||| ||| | || || Sbjct 26432 GAAAGGAATGTTCTTATCTTTGACCTTGGAGGTGGCACCTTTGATGTGTCAATTCTGACT 26373 Query 349820 CTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAA 349879 ||||||| || || ||||| || ||| | ||||| ||||| || || | ||||||||| Sbjct 26372 ATTGAAGATGGCATCTTTGAGGTGAAATCCACTGCAGGTGACACTCACTTGGGTGGAGAA 26313 Query 349880 GATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAAT 349938 || ||||| || || | || || || || ||||| ||||| ||||| || | Sbjct 26312 GACTTTGACAACCGCATGGTCAACCACTTCATTGCTGAATTCAAGCG-CAAGCACAAGAA 26254 Query 349939 TGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAA 349998 || || | || || |||||| | |||||||| | || || || || ||||| || Sbjct 26253 AGACATCAGTGAGAACAAGAGAGCAGTTCGTCGCCTCCGCACCGCATGCGAGCGTGCAAA 26194 Query 349999 GCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAA 350058 |||| | | || |||| || || || |||||||||||||||||| ||| || | Sbjct 26193 GCGTACTCTGTCTTCTAGCACGCAGGCCAGTATTGAAATTGATTCTCTCTATGAGGGTAT 26134 Query 350059 AGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATG--GATCTTTTT 350116 || |||| |||| ||||| | ||||| |||||||| || | | || || || Sbjct 26133 TGACTTCTACACATCCATTACCAGAGCTCGCTTTGAAGA--GCTGAACGCTGACCTGTTC 26076 Query 350117 AGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAG 350176 | | || |||||||||||||||| | | ||||| ||| | |||| ||| Sbjct 26075 CGTGGCACCCTGGATCCTGTGGAAAAGGCCCTGCGGGATGCCAAACTTGACAAATCGCAG 26016 Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 || |||| | || | |||||||| ||||| || || ||||| |||| | | || Sbjct 26015 ATCCATGACATCGTGCTGGTTGGTGGGTCTACTCGCATCCCAAAGATTCAGAAACTGCTG 25956 Query 350237 TCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGC 350295 || || || ||||||||||||| | ||| | || ||||| ||||||||||| || Sbjct 25955 CAGGACTTCTTCAATGGCAAAGAACTGAACAAGAGC-ATCAATCCTGATGAAGCTGTGGC 25897 Query 350296 ATATGGTGC 350304 |||||||| Sbjct 25896 TTATGGTGC 25888 Score = 132 bits (146), Expect = 1e-25 Identities = 349/530 (66%), Gaps = 2/530 (0%) Strand=Plus/Plus Query 183262 CTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAA-TTCTTTGCCATTA 183320 |||||||||| || ||||||||||| || || || | | | | | |||||||||||| Sbjct 25886 CTGCACCATAAGCCACAGCTTCATCAGGATTGAT-GCTCTTGTTCAGTTCTTTGCCATTG 25944 Query 183321 AAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATACT 183380 || || || |||| || ||||| ||||| || | ||| || ||||| || | || Sbjct 25945 AAGAAGTCCTGCAGCAGTTTCTGAATCTTTGGGATGCGAGTAGACCCACCAACCAGCACG 26004 Query 183381 ACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGGTCC 183440 | |||| ||| | ||| || || | ||| | | ||||| ||||| ||| Sbjct 26005 ATGTCATGGATCTGCGATTTGTCAAGTTTGGCATCCCGCAGGGCCTTTTCCACAGGATCC 26064 Query 183441 ATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAAGATGaa 183500 | || | || | || | |||||| || | ||||| || | |||| Sbjct 26065 AGGGTGCCACGGAACAGGTCAGCGTTCAGCTCTTCAAAGCGAGCTCTGGTAATGGATGTG 26124 Query 183501 aaaaaGTCAATACCATTATATAAGGAATCAATTTCAATCGATGTTTGTGTAGATGATGAT 183560 | ||||||||||| | ||| | |||||||||||||| | || || || || Sbjct 26125 TAGAAGTCAATACCCTCATAGAGAGAATCAATTTCAATACTGGCCTGCGTGCTAGAAGAC 26184 Query 183561 AATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTATCT 183620 | || | || || || || ||||| || | || ||||| | || ||| || || Sbjct 26185 AGAGTACGCTTTGCACGCTCGCATGCGGTGCGGAGGCGACGAACTGCTCTCTTGTTCTCA 26244 Query 183621 GTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTTGTA 183680 | || |||| || || || | || ||||||| ||| || || | | | | | Sbjct 26245 CTGATGTCTTTCTTGTGCTTGCGCTTGAATTCAGCAATGAAGTGGTTGACCATGCGGTTG 26304 Query 183681 TCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCG 183740 ||||| ||||| ||||| || || || || || ||||| | ||| || ||||| || || Sbjct 26305 TCAAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAGATGCCA 26364 Query 183741 TCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 ||||||||| | | |||||| |||||||| || ||||| || | ||||| Sbjct 26365 TCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAA 26414 Score = 102 bits (112), Expect = 2e-16 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 349598 ACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCA 349657 || || ||| | ||||| | ||||||||||||||||| ||||| | || ||| || Sbjct 26696 ACTGTTACTAACGCTGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAACGTCAGGCT 26637 Query 349658 ACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACT 349717 || ||||||||||| | |||||| ||| | ||||| || |||| || || || || || Sbjct 26636 ACTAAAGATGCTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAACGAGCCAACA 26577 Query 349718 GCTGCAGCAATTGCATATGGGCTTGATAAAA 349748 ||||| || || || ||||| || || |||| Sbjct 26576 GCTGCTGCGATAGCCTATGGTCTGGACAAAA 26546 Score = 95.1 bits (104), Expect = 4e-14 Identities = 117/157 (75%), Gaps = 5/157 (3%) Strand=Plus/Minus Query 349433 CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATT 349492 || |||||| | || || | ||||| ||||| || || || | || | ||||| Sbjct 26958 CAGTCTGATATGAAGCACTGGCCTTTCACTGTGGTG---AATGATGCTGGCAGACCAAAA 26902 Query 349493 ATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAAT 349551 | |||| || || ||||| || | ||| | ||||||||| ||||||||||| || || Sbjct 26901 GTCCAGGTGGAGTACAAAGGCGAG-ACAAAGAGTTTTTACCCAGAAGAAATTTCTTCCAT 26843 Query 349552 GGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATAT 349588 ||||||| ||||||||||||||||| ||||||||| Sbjct 26842 GGTTTTAACCAAAATGAAGGAAATTGCAGAAGCATAT 26806 >seq23118 Length=2796 Score = 178 bits (196), Expect = 4e-39 Identities = 544/832 (65%), Gaps = 18/832 (2%) Strand=Plus/Minus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 ||||||| || || || || || || || ||||| ||||||| || || ||||||| Sbjct 2011 ATGCTGTCATCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATG 1952 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||||| ||| | || | ||||| | | || || ||||| ||||| || || || | Sbjct 1951 CTGGCACCATCACTGGCCTTAATGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTA 1892 Query 349728 TTGCATATGGGCTTGATAAAATGAGTGACC------AAGaaaaaaaTATTCTTATTTTTG 349781 | || ||||| | || || | || || ||| || || | || || |||| Sbjct 1891 TAGCCTATGGCTTGGACAAGAAAGGTACCCGGGCTGGAGAGAAGAACGTGCTCATCTTTG 1832 Query 349782 ATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAG 349841 | || || || || ||||| ||||| || | || || |||| || || || ||||| | Sbjct 1831 ACTTGGGAGGGGGCACTTTCGATGTGTCCATCCTTACCATTGAGGATGGCATCTTTGAGG 1772 Query 349842 TTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTT 349901 | || | || |||||||| || ||||| ||||| || || ||||| || || | || Sbjct 1771 TGAAGTCTACAGCTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAACCGCATGGTGA 1712 Query 349902 CGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGA 349960 |||||||| ||||||| |||||| |||| || ||| |||| | || || Sbjct 1711 ACCATTTTGTGGAAGAATTCAAGCGT-AAGCACAAGCGTGACATTGCTGGCAACAAGCGA 1653 Query 349961 GCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTC-CTTATCATCTACTAC 350019 ||| || | || || | || || ||||| | || ||||| | || | | ||| | || Sbjct 1652 GCAGTGAGGCGACTGCGTACAGCTTGTGAGAGGGCAAAGCGCACTCTCAGC-TCTTCCAC 1594 Query 350020 CCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTAC 350079 ||| | || || || || || || || || | || |||| | || ||||| Sbjct 1593 GCAAGCTAGCATCGAGATCGACTCCCTCTACGAGGGTATTGACTTCTACACCTCCATTAC 1534 Query 350080 ACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGA 350139 |||||||| || || || | | ||||| || | | || |||| || ||||| Sbjct 1533 TCGTGCTCGCTTCGAGGAGCTCAATGCTGATCTCTTCCGTGGCACCCTGGAGCCAGTGGA 1474 Query 350140 AAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGG 350199 || | | ||||| || | ||| ||||| | || | || | || || Sbjct 1473 GAAGGCTCTGCGTGATGCCAAGCTAGACAAGGGCCAGATCCAGGAGATTGTGCTGGTGGG 1414 Query 350200 TGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGA 350259 ||| || || ||||| || || | ||| || | ||| || || || ||||||||||| Sbjct 1413 TGGCTCCACTCGTATCCCCAAGATCCAAAAGCTGCTACAGGACTTCTTCAATGGCAAAGA 1354 Query 350260 AC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCAT 350318 | | | ||| | || || || ||||| |||||||| || || |||||||| || ||| Sbjct 1353 GCTCAACAAGAGC-ATCAACCCCGATGAGGCTGTTGCTTACGGCGCTGCTGTGCAAGCAG 1295 Query 350319 CTATTTTATCTGGAAATAAGAGTTCTAAAATTG---ATGATCTATTACTACTAGATGTAA 350375 |||| | ||| | ||| ||| | | || | ||||| || || | ||||| | Sbjct 1294 CTATCCTCATGGGAGACAAG---TCTGAGAATGTGCAGGATCTGTTGCTGTTGGATGTCA 1238 Query 350376 CTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTAT 350427 | || || || || || | || || |||||| ||| ||||||| ||| || Sbjct 1237 CCCCTCTGTCCCTGGGCATCGAGACAGCTGGTGGAGTGATGACTGCTCTCAT 1186 >seq49351 Length=2879 Score = 114 bits (126), Expect = 4e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || || || || || || || || || || || || | || ||||||||||| | Sbjct 356 CAAG-TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCA 298 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || ||||| ||||| || | ||||||||||| ||||| || || || ||||| | Sbjct 297 GCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGA 238 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || ||||| ||||| | ||| || ||||| || || || | ||||| | Sbjct 237 TCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGC 178 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || || || |||||||| Sbjct 177 CCGTCAGGGTCTTCACGAAGATCTGCAT 150 >seq7285 Length=7271 Score = 96.9 bits (106), Expect = 1e-14 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 |||||||| ||||||| |||||||| || |||||||| |||||| || || ||||||| Sbjct 6277 ATGCTGTTGTTACTGTGCCAGCCTACTTCAATGATGCTCAGCGTCAGGCTACGAAAGATG 6218 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACC 349713 |||| | ||||| ||||| ||||| | || || |||||||| || Sbjct 6217 CTGGTACTATTGCTGGGTTGAATGTGATGAGGATTATTAATGAGCC 6172 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 |||||||| | ||| | |||||||| ||||| || || || ||| | || || || | Sbjct 5306 ATTGATGAGATTGTTCTTGTTGGTGGCTCTACTCGCATCCCCAAAATACAGCAACTAGTT 5247 Query 350237 TCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCA 350296 ||||| || ||||| ||||| |||||| | ||||||||||| || || || || Sbjct 5246 AAAGAGTTCTTCAATGGGAAAGAGCCTTCTCGTGGCATTAATCCAGACGAGGCCGTAGCC 5187 Query 350297 TATGGTGCTGCTGTTCAGGC 350316 |||||||| ||||| ||||| Sbjct 5186 TATGGTGCGGCTGTCCAGGC 5167 Score = 86.0 bits (94), Expect = 2e-11 Identities = 123/173 (71%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 || ||||| || || || ||||| | ||||| ||| || || || || || || Sbjct 6084 ACAGCTGCTGCCATCGCTTATGGATTGGATAA---GAGAGAGGGTGAGAAGAACATCCTC 6028 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 | ||||| || |||||||| |||||||| || || || || ||| |||| | ||| | Sbjct 6027 GTCTTTGACTTGGGTGGTGGGACTTTTGACGTCTCCCTCCTCACAATTGACAATGGAGTC 5968 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 || |||||| || ||| ||| || || || || ||||||||||| ||||| Sbjct 5967 TTCGAAGTTGTGGCTACTAATGGCGACACTCACCTGGGTGGAGAAGACTTTGA 5915 >seq32411 Length=23632 Score = 93.3 bits (102), Expect = 1e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 223719 ATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCT 223778 || |||||||||| || | |||||| ||||| || | |||||||||||| ||||| | Sbjct 20693 ATACCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTT 20752 Query 223779 TTTTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAA 223838 | |||| |||||| |||| ||||| |||||||| || || ||||| || |||| Sbjct 20753 TCTTCAGCCAAAAAATTGATGCAAAAGAGCCTGAAAAGAAGATCCCTTCCACTGCTGCAA 20812 Query 223839 ACGCTACTA 223847 | ||||||| Sbjct 20813 AAGCTACTA 20821 >seq40145 Length=14051 Score = 89.7 bits (98), Expect = 2e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607 ||||||||||||| || ||||| | || || |||||||| || || || |||||||| | Sbjct 484 CTTTTTGAATATTGTAGTCAGACAGCGTGCGTCCATCTTCTAGCTGCTTACCAGCAAAAA 425 Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCT 140636 | || || ||||||||||||||||| ||| Sbjct 424 TCAGTCGCTGCTGATCAGGAGGAATGCCT 396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514054000785293